Add attainment rate functionality

[kristinmarshall-NOAA]

We need to add an attainment rate to run the attainment scenarios for the JMC. This will probably involve:

• add an attainment rate parameter to getrefpoints() to force reduced catch during the projection period. A 2 element vector probably makes sense so we can modify US and Canadian attainment rates independently

-add the parameter to the om data frame such that it can be modified in the run scripts

[cgrandin]

I did this in 4e2b520, and pacific-hake/runhakemse@cdc66c7 and ran them overnight for 20 runs. I will post back once I fixed some of the palette color issues (over 8 scenarios requires new palette) for the plots.

[iantaylor-NOAA]

Nice work @cgrandin!
Out of the 9 cases, I think interpretation might be easier if the results were split into 2 groups as follows, where the contrast among scenarios in the first group will be presumably much larger than the second, so this would allow better examination of the differences in the second group:

c("01_us_0_can_0",
  "02_us_100_can_100",
  "03_us_0_can_100",
  "04_us_100_can_0")

c("05_us_77_can_56",
  "06_us_90_can_56",
  "07_us_60_can_56",
  "08_us_77_can_70",
  "09_us_77_can_90")

[cgrandin]

That’s a good idea, The plot with all nine is very busy. Do you think the unfished baseline one should appear on both though?

[iantaylor-NOAA]

I would defer to Kristin's judgement on that, but if 6 per figure isn't too many, adding unfished to all seems like a good idea.

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On Fri, Nov 20, 2020 at 10:30 AM Chris Grandin ***@***.***> wrote: That’s a good idea, The plot with all nine is very busy. Do you think the unfished baseline one should appear on both though? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#3 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABGC7FWJ3UUIEMUNDP7YESTSQ2YV3ANCNFSM4T5AA2WQ> .