######### odgi kmers #########
Display and characterize the kmer space of a graph.
odgi kmers [-i, --idx=FILE] [-c, --stdout] [OPTION]…
Given a kmer length, the odgi kmers command can emit all kmers. The output can be refined by setting the maximum number of furcations at edges or by not considering nodes above a given node degree limit.
MANDATORY ARGUMENTS --------------
-i, --idx=FILE
Load the succinct variation graph in ODGI format from this FILE. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!
Load the succinct variation graph in ODGI format from this FILE. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!
-k, --kmer-length=N
The kmer length to generate kmers from.
The kmer length to generate kmers from.
-c, --stdout
Write the kmers to standard output. Kmers are line-separated.
Write the kmers to standard output. Kmers are line-separated.
-e, --max-furcations=N
Break at edges that would induce this many furcations when generating a kmer.
Break at edges that would induce this many furcations when generating a kmer.
-D, --max-degree=N
Don’t take nodes into account that have a degree greater than N.
Don’t take nodes into account that have a degree greater than N.
-t, --threads=N
Number of threads to use for parallel operations.
Number of threads to use for parallel operations.
-P, --progress
Print information about the operations and the progress to stderr.
Print information about the operations and the progress to stderr.
-h, --help
Print a help message for odgi kmers.
Print a help message for odgi kmers.