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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 383 44

  2. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 194 40

  3. impg impg Public

    implicit pangenome graph

    Rust 42 5

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 56 6

Repositories

Showing 10 of 62 repositories
  • impg Public

    implicit pangenome graph

    pangenome/impg’s past year of commit activity
    Rust 42 MIT 5 2 1 Updated Nov 4, 2024
  • gafpack Public

    convert variation graph alignments to coverage maps over nodes

    pangenome/gafpack’s past year of commit activity
    Rust 21 MIT 1 0 0 Updated Nov 4, 2024
  • pggb Public

    the pangenome graph builder

    pangenome/pggb’s past year of commit activity
    Shell 383 MIT 44 32 0 Updated Nov 1, 2024
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi’s past year of commit activity
    C++ 194 MIT 40 42 (1 issue needs help) 7 Updated Oct 29, 2024
  • HumanPangenomeBYOD2024 Public

    Material for the Human Pangenome Bring Your Own Data (BYOD) analysis Workshop 2024, October 21-25 in Cape Town, South Africa.

    pangenome/HumanPangenomeBYOD2024’s past year of commit activity
    7 MIT 1 0 0 Updated Oct 29, 2024
  • genotypify Public

    Genotyping lots of samples with big pangenomes

    pangenome/genotypify’s past year of commit activity
    5 MIT 0 0 0 Updated Oct 29, 2024
  • smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    pangenome/smoothxg’s past year of commit activity
    C++ 56 6 7 1 Updated Oct 15, 2024
  • PanSN-spec Public

    Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes

    pangenome/PanSN-spec’s past year of commit activity
    31 1 3 1 Updated Oct 13, 2024
  • lifetree Public

    hard mode all genomes alignment

    pangenome/lifetree’s past year of commit activity
    Shell 5 2 0 0 Updated Sep 3, 2024
  • povu Public
    pangenome/povu’s past year of commit activity
    C++ 10 MIT 1 1 0 Updated Aug 13, 2024
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