Project a graph into other formats.
odgi view [-i, --idx=FILE] [OPTION]…
The odgi view command can convert a graph in odgi format to GFAv1. It can reveal a graph’s internal structures for e.g. debugging processes.
MANDATORY OPTIONS --------------
-i, --idx=FILE
Load the succinct variation graph in ODGI format from this FILE. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!
Load the succinct variation graph in ODGI format from this FILE. The file name usually ends with .og. It also accepts GFAv1, but the on-the-fly conversion to the ODGI format requires additional time!
-g, --to-gfa
Write the graph in GFAv1 format to standard output.
Write the graph in GFAv1 format to standard output.
-a, --node-annotation
Emit node annotations for the graph in GFAv1 format.
Emit node annotations for the graph in GFAv1 format.
-d, --display
Show the internal structures of a graph. Print to stderr the maximum node identifier, the minimum node identifier, the nodes vector, the delete nodes bit vector and the path metadata, each in a separate line.
Show the internal structures of a graph. Print to stderr the maximum node identifier, the minimum node identifier, the nodes vector, the delete nodes bit vector and the path metadata, each in a separate line.
-t, --threads=N
Number of threads to use for parallel operations.
Number of threads to use for parallel operations.
-P, --progress
Print information about the operations and the progress to stderr.
Print information about the operations and the progress to stderr.
-h, --help
Print a help message for odgi view.
Print a help message for odgi view.