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Merge pull request #381 from pangenome/update_smoothxg
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update smoothxg
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subwaystation committed Mar 19, 2024
2 parents fbf6771 + 56cd549 commit 7bb5b78
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -76,7 +76,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \
RUN git clone --recursive https://github.com/pangenome/smoothxg \
&& cd smoothxg \
&& git pull \
&& git checkout 52a81b7f87a7d7ad2e8bf5dc6e099a0556614f4a \
&& git checkout 4c269081faf86302e22f0271931b2d862277d3fa \
&& git submodule update --init --recursive \
&& sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
&& sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \
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