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update wfmash
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AndreaGuarracino committed May 4, 2024
1 parent 2c91de0 commit 832de90
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -50,7 +50,7 @@ RUN wget https://github.com/samtools/bcftools/releases/download/1.19/bcftools-1.
RUN git clone --recursive https://github.com/waveygang/wfmash \
&& cd wfmash \
&& git pull \
&& git checkout 042386f01e6a5fdee5bb7d325529f035fbad0a29 \
&& git checkout 251f4e1d7770723d3495e9d7b443f941798d4174 \
&& git submodule update --init --recursive \
&& sed -i 's/-march=native/-march=sandybridge/g' src/common/wflign/deps/WFA2-lib/Makefile \
&& cmake -H. -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast' -Bbuild && cmake --build build -- -j $(nproc) \
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