AspenPopulationGenomics

Scripts for Wang et al. (2016) "Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species" Genetics 202, 1185-1200.

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Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
CITATION.md		CITATION.md
LICENSE		LICENSE
README.md		README.md
angsd_SFS_tremula.angsd0.902.3.sh		angsd_SFS_tremula.angsd0.902.3.sh
angsd_SFS_tremuloides.angsd0.902.3.sh		angsd_SFS_tremuloides.angsd0.902.3.sh
est_dfe.tremula.bootstrap.sh		est_dfe.tremula.bootstrap.sh
est_dfe.tremula.sh		est_dfe.tremula.sh
est_dfe.tremula.summary.sh		est_dfe.tremula.summary.sh
est_dfe.tremuloides.bootstrap.sh		est_dfe.tremuloides.bootstrap.sh
est_dfe.tremuloides.sh		est_dfe.tremuloides.sh
est_dfe.tremuloides.summary.sh		est_dfe.tremuloides.summary.sh
est_dfe.trichocarpa.bootstrap.sh		est_dfe.trichocarpa.bootstrap.sh
est_dfe.trichocarpa.sh		est_dfe.trichocarpa.sh
est_dfe.trichocarpa.summary.sh		est_dfe.trichocarpa.summary.sh
est_dfe.trichocarpa_2.sh		est_dfe.trichocarpa_2.sh
est_dfe_gatk.tremula.bootstrap.sh		est_dfe_gatk.tremula.bootstrap.sh
est_dfe_gatk.tremula.sh		est_dfe_gatk.tremula.sh
est_dfe_gatk.tremula.summary.sh		est_dfe_gatk.tremula.summary.sh
est_dfe_gatk.tremuloides.bootstrap.sh		est_dfe_gatk.tremuloides.bootstrap.sh
est_dfe_gatk.tremuloides.sh		est_dfe_gatk.tremuloides.sh
est_dfe_gatk.tremuloides.summary.sh		est_dfe_gatk.tremuloides.summary.sh
est_dfe_gatk.trichocarpa.bootstrap.sh		est_dfe_gatk.trichocarpa.bootstrap.sh
est_dfe_gatk.trichocarpa.sh		est_dfe_gatk.trichocarpa.sh
est_dfe_gatk.trichocarpa.summary.sh		est_dfe_gatk.trichocarpa.summary.sh
gene_alpha_input.tremula.sh		gene_alpha_input.tremula.sh
gene_alpha_input.tremuloides.sh		gene_alpha_input.tremuloides.sh
gene_alpha_input.trichocarpa.sh		gene_alpha_input.trichocarpa.sh
gene_alpha_input.trichocarpa_2.sh		gene_alpha_input.trichocarpa_2.sh
gene_divergence.4_fold.tremula.sh		gene_divergence.4_fold.tremula.sh
gene_divergence.4_fold.tremuloides.sh		gene_divergence.4_fold.tremuloides.sh
gene_diversity_divergence.tremula.sh		gene_diversity_divergence.tremula.sh
gene_diversity_divergence.tremuloides.sh		gene_diversity_divergence.tremuloides.sh
gene_diversity_divergence.trichocarpa.sh		gene_diversity_divergence.trichocarpa.sh
pariwise_shared_snp.sh		pariwise_shared_snp.sh
submit.gene_divergence_4fold.tremula.sh		submit.gene_divergence_4fold.tremula.sh
submit.gene_divergence_4fold.tremuloides.sh		submit.gene_divergence_4fold.tremuloides.sh
submit.gene_diversity_divergence.tremula.sh		submit.gene_diversity_divergence.tremula.sh
submit.gene_diversity_divergence.tremuloides.sh		submit.gene_diversity_divergence.tremuloides.sh
submit.gene_diversity_divergence.trichocarpa.sh		submit.gene_diversity_divergence.trichocarpa.sh
submit_gene_alpha.tremula.sh		submit_gene_alpha.tremula.sh
submit_gene_alpha.tremuloides.sh		submit_gene_alpha.tremuloides.sh
submit_gene_alpha.trichocarpa.sh		submit_gene_alpha.trichocarpa.sh
submit_gene_alpha.trichocarpa_2.sh		submit_gene_alpha.trichocarpa_2.sh
vcf_species_shared.sh		vcf_species_shared.sh

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