Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

dbSNP not found #66

Open
GENEDECODERS opened this issue Feb 11, 2022 · 0 comments
Open

dbSNP not found #66

GENEDECODERS opened this issue Feb 11, 2022 · 0 comments

Comments

@GENEDECODERS
Copy link

java -jar ~/anaconda3/share/snpsift-4.3.1t-3/SnpSift.jar annotate -dbsnp /home/jiaxue/Downloads/file.vcf > /home/jiaxue/Downloads/file.dbSnp.vcf
Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException: File not found '/home/jiaxue/anaconda3/share/snpsift-4.3.1t-3/./db/GRCh37/dbSnp'
at org.snpsift.SnpSiftCmdAnnotate.annotate(SnpSiftCmdAnnotate.java:72)
at org.snpsift.SnpSiftCmdAnnotate.run(SnpSiftCmdAnnotate.java:410)
at org.snpsift.SnpSiftCmdAnnotate.run(SnpSiftCmdAnnotate.java:397)
at org.snpsift.SnpSift.run(SnpSift.java:588)
at org.snpsift.SnpSift.main(SnpSift.java:76)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@GENEDECODERS