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Package: BiocProject | ||
Title: Bioconductor Management with Portable Encapsulated Project (PEP) Objects | ||
Version: 0.2 | ||
Authors@R: c(person("Michal", "Stolarczyk", email = "mjs5kd@virginia.edu",role = c("aut", "cre")), | ||
Version: 0.2.1 | ||
Authors@R: c(person("Michal", "Stolarczyk", email = "michal@virginia.edu",role = c("aut", "cre")), | ||
person("Nathan", "Sheffield", email = "nathan@code.databio.org",role = c("aut"))) | ||
Description: A Bioconductor-oriented project management class. It wraps the | ||
generic pepr R package for project metadata. BiocProject allows you to read | ||
in project metadata and data for an entire project with a single line of R code. | ||
License: GPL-3 | ||
License: BSD_2_clause + file LICENSE | ||
Encoding: UTF-8 | ||
LazyData: true | ||
Depends: S4Vectors, pepr, methods | ||
Suggests: | ||
knitr, | ||
rmarkdown, | ||
testthat, | ||
yaml | ||
Depends: pepr, S4Vectors | ||
Imports: methods, glue, RCurl, yaml, stats, pryr | ||
Suggests: knitr, rmarkdown, testthat, BiocStyle | ||
Enhances: BiocFileCache, simpleCache, GenomicRanges | ||
biocViews: DataImport, DataRepresentation | ||
RoxygenNote: 6.1.1 | ||
URL: https://github.com/pepkit/BiocProject | ||
BugReports: https://github.com/pepkit/BiocProject | ||
License: BSD_2_clause + file LICENSE | ||
biocViews: Infrastructure, DataImport, DataRepresentation | ||
RoxygenNote: 7.1.0 | ||
URL: http://code.databio.org/BiocProject/ | ||
BugReports: https://github.com/pepkit/BiocProject/issues | ||
VignetteBuilder: knitr |
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YEAR: 2018 | ||
COPYRIGHT HOLDER: Nathan Sheffield |
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# Generated by roxygen2: do not edit by hand | ||
|
||
export(.insertPEP) | ||
export(.pyToR) | ||
export(.setShowMethod) | ||
export(.updateList) | ||
export(.unionList) | ||
export(BiocProject) | ||
export(gatherPipelineInterfaces) | ||
export(getOutputsBySample) | ||
export(getProjectOutputs) | ||
export(pipelineInterfacesBySample) | ||
export(readSchema) | ||
exportMethods(config) | ||
exportMethods(getProject) | ||
exportMethods(is) | ||
exportMethods(samples) | ||
exportMethods(sampleTable) | ||
import(S4Vectors) | ||
import(methods) | ||
import(pepr) | ||
importFrom(RCurl,getURLContent) | ||
importFrom(glue,glue) | ||
importFrom(methods,new) | ||
importFrom(pepr,checkSection) | ||
importFrom(pepr,config) | ||
importFrom(pryr,partial) | ||
importFrom(stats,setNames) | ||
importFrom(yaml,yaml.load_file) |
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