update tests and data

pepkit · Apr 17, 2019 · 59a9e4c · 59a9e4c
1 parent a25bb55
commit 59a9e4c
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Showing 4 changed files with 2 additions and 7 deletions.
diff --git a/inst/test_projects/faulty_project/project_config_no_function.yaml b/inst/test_projects/faulty_project/project_config_no_function.yaml
@@ -1,7 +1,7 @@
 # This is a faulty PEP.
 # The readFunName and readFunPath values point to function that does not exist
 metadata:
-  sample_annotation: sample_annotation.csv
+  sample_table: sample_table.csv
 
 bioconductor:
   readFunName: readBedFiles_missing

diff --git a/inst/test_projects/faulty_project/project_config_no_section.yaml b/inst/test_projects/faulty_project/project_config_no_section.yaml
@@ -1,4 +1,4 @@
 # This is a faulty PEP.
 # The bioconductor section does not exist
 metadata:
-  sample_annotation: sample_annotation.csv
+  sample_table: sample_table.csv
diff --git a/...ects/faulty_project/sample_annotation.csv → ..._projects/faulty_project/sample_table.csv b/...ects/faulty_project/sample_annotation.csv → ..._projects/faulty_project/sample_table.csv
diff --git a/tests/testthat/test_all.R b/tests/testthat/test_all.R
@@ -187,11 +187,6 @@ test_that("BiocProject function throws a warning and returns a Project object
     expect_warning(expect_is(BiocProject(configFileNoSection),"Project"))
 })
 
-test_that("BiocProject function throws an error 
-          when nonexistent subproject is provided",{
-    expect_error(expect_warning(BiocProject(configFile, subproject = "test")))
-})
-
 context("Test Annotated methods")
 
 test_that("samples returns a correct object", {