use pipestat to set status to 'waiting' if rerunning a failed sample. #…

…169
pepkit · Oct 5, 2023 · 6ccebc6 · 6ccebc6
1 parent e45c0f6
commit 6ccebc6
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/looper/conductor.py b/looper/conductor.py
@@ -432,6 +432,11 @@ def add_sample(self, sample, rerun=False):
             sample_statuses = psms[self.pl_name].get_status(
                 record_identifier=sample.sample_name
             )
+            if sample_statuses == "failed" and rerun is True:
+                psms[self.pl_name].set_status(
+                    record_identifier=sample.sample_name, status_identifier="waiting"
+                )
+                sample_statuses = "waiting"
             sample_statuses = [sample_statuses] if sample_statuses else []
         else:
             sample_statuses = fetch_sample_flags(self.prj, sample, self.pl_name)