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Releases: pepkit/looper

v1.7.0

26 Jan 14:44
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[1.7.0] -- 2024-01-26

Added

  • --portable flag to looper report to create a portable version of the html report
  • --lump-j allows grouping samples into a defined number of jobs

Changed

  • --lumpn is now --lump-n
  • --lump is now --lump-s

v1.7.0a1

22 Jan 14:16
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v1.7.0a1 Pre-release
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v1.7.0a1

v1.6.0

22 Dec 16:31
b47a568
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Looper v1.6.0 - Major Release

[1.6.0] -- 2023-12-22

Added

  • looper link creates symlinks for results grouped by record_identifier. It requires pipestat to be configured. #72
  • basic tab completion.

Changed

  • looper now works with pipestat v0.6.0 and greater.
  • looper table, check now use pipestat and therefore require pipestat configuration. #390
  • changed how looper configures pipestat #411
  • initializing pipeline interface also writes an example output_schema.yaml and count_lines.sh pipeline

Fixed

  • filtering via attributes that are integers.

v1.6.0a3

20 Dec 14:13
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v1.6.0a3 Pre-release
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v1.6.0a3

v1.6.0a2

14 Dec 14:59
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v1.6.0a2 Pre-release
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v1.6.0a2

v1.6.0a1

14 Dec 14:52
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v1.6.0a1 Pre-release
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v1.6.0a1

v1.5.1

14 Aug 13:10
145c0d6
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  • change --looper_config to --looper-config

v1.5.0

09 Aug 17:28
6ac3b12
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[1.5.0] --

Added

  • ability to use PEPs from PEPhub without downloading project #341
  • ability to specify pipeline interfaces inside looper config Looper Config
  • divvy re-integrated in looper
  • divvy inspect -p package
  • Looper will now check that the command path provided in the pipeline interface is callable before submitting.

Changed

  • initialization of generic pipeline interface available using subcommand init-piface
  • looper report will now use pipestat to generate browsable HTML reports if pipestat is configured.
  • looper now works with pipestat v0.5.0.
  • Removed --toggle-key functionality.
  • Allow for user to input single integer value for --sel-incl or --sel-excl

v1.4.3

01 Aug 15:35
9942106
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[1.4.3] -- 2023-08-01

Fixed

  • Fix regression for var_templates expansion.

v1.4.2

31 Jul 21:18
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  • fix expanding paths for var_templates.