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286 followers · 13 following · 64

Highlights

  • Arctic Code Vault Contributor

Organizations

@biopython @biosql @OBF @HuttonICS

Popular repositories

  1. biopython_workshop

    A basic introduction to Biopython, intended for a classroom based workshop

    Python 134 40

  2. flake8-black

    flake8 plugin to run black for checking Python coding style

    Python 75 7

  3. backports.lzma

    Backport of Python 3.3's standard library module lzma for LZMA/XY compressed files

    Python 54 28

  4. galaxy_blast

    Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

    Python 48 61

  5. mediawiki_to_git_md

    Convert a MediaWiki export XML file into MarkDown as a series of git commits

    Python 40 15

  6. picobio

    Miscellaneous Bioinformatics scripts etc mostly in Python

    Python 37 11

2,274 contributions in the last year

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Contribution activity

October 2020

Created a pull request in biopython/biopython that received 8 comments

Fix some of the issues spotted by SonarCload

I hereby agree to dual licence this and any previous contributions under both the Biopython License Agreement AND the BSD 3-Clause License. …

+26 −65 • 8 comments

Created an issue in peterjc/thapbi-pict that received 3 comments

Record insert size during prepare-reads

If want the library's insert size (e.g. for ENA submission #173), we need to look at the sequences after merging with flash, but before primer trim…

3 comments

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