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Merge pull request #97 from phac-nml/development
Deploy to PyPI on release
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,39 +1,31 @@ | ||
| notifications: # set notification options | ||
| email: | ||
| recipients: | ||
| - mgopez95@gmail.com | ||
| - peter.kruczkiewicz@gmail.com | ||
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| # change is when the repo status goes from pass to fail or vice versa | ||
| on_success: change | ||
| on_failure: change | ||
|
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| language: python | ||
| python: | ||
| - '3.6' | ||
| - '3.6' | ||
| os: | ||
| - linux | ||
| # - osx | ||
|
|
||
| # Whitelist of branches to run CI Testing on. | ||
| - linux | ||
| branches: | ||
| only: | ||
| - master | ||
| - development | ||
|
|
||
| # Blacklist of branches to not run CI testing on. | ||
| # branches: | ||
| # except: | ||
| # - dontrunme | ||
| # - test | ||
|
|
||
| before_install: | ||
| - sudo apt-get -qq update; | ||
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| install: | ||
| - python setup.py install | ||
| #Install pytest for testing. | ||
| - pip install pytest | ||
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| script: | ||
| - pytest | ||
| - master | ||
| - development | ||
| install: pip install -U tox-travis | ||
| script: tox | ||
| deploy: | ||
| provider: pypi | ||
| distributions: sdist bdist_wheel | ||
| user: peterk87 | ||
| deployment: bio-hansel | ||
| password: | ||
| secure: 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 | ||
| on: | ||
| tags: true | ||
| repo: phac-nml/bio_hansel | ||
| python: 3.6 | ||
| notifications: | ||
| email: | ||
| recipients: | ||
| - mgopez95@gmail.com | ||
| - peter.kruczkiewicz@gmail.com | ||
| - darian.hole@canada.ca | ||
| - philip.mabon@canada.ca | ||
| on_success: change | ||
| on_failure: change |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,9 @@ | ||
| # -*- coding: utf-8 -*- | ||
|
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| __version__ = '2.2.0' | ||
| __version__ = '2.3.0' | ||
| program_name = 'bio_hansel' | ||
| program_summary = 'Subtype microbial genomes using SNV targeting k-mer subtyping schemes.' | ||
| program_desc = program_summary + ''' | ||
| Includes schemes for Salmonella enterica spp. enterica serovar Heidelberg, Enteritidis, and Typhi subtyping. Also includes a Mycobacterium Tuberculosis scheme. | ||
| Includes schemes for Salmonella enterica spp. enterica serovar Heidelberg, Enteritidis, Typhi, and Typhimurium subtyping. Also includes a Mycobacterium Tuberculosis scheme. | ||
| Developed by Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Marisa Rankin, Matthew Gopez, Chad R. Laing, Philip Mabon, Kim Ziebell, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, David Son, Darian Hole, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Marisa Rankin, Joanne MacKinnon, Roger Johnson, John H.E. Nash. | ||
| ''' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,61 @@ | ||
| subtype Coll_et_al_genotype | ||
| 1 1 | ||
| 1.1 1.1 | ||
| 2.1 2.1 | ||
| 3 3 | ||
| 4 4 | ||
| 4.1 4.1 | ||
| 4.2 4.2 | ||
| 4.3 4.3 | ||
| 4.4 4.4 | ||
| 4.5 4.5 | ||
| 4.6 4.6 | ||
| 4.7 4.7 | ||
| 4.8 4.8 | ||
| 4.9 4.9 | ||
| 5 5 | ||
| 7 7 | ||
| 8 bov_afr | ||
| 8.1 bov | ||
| 8.2 6 | ||
| 1.1.1 1.1.1 | ||
| 1.1.1.1 1.1.1.1 | ||
| 1.1.2 1.1.2 | ||
| 1.1.3 1.1.3 | ||
| 1.2 1.2.1 | ||
| 1.3 1.2.2 | ||
| 2.2.1 2.2.1 | ||
| 2.2.1.1 2.2.1.1 | ||
| 2.2.1.2 2.2.1.2 | ||
| 2.2.2 2.2.2 | ||
| 3.1 3.1.1 | ||
| 3.2 3.1.2 | ||
| 3.2.1 3.1.2.1 | ||
| 3.2.2 3.1.2.2 | ||
| 4.1.1 4.1.1 | ||
| 4.1.1.1 4.1.1.1 | ||
| 4.1.1.2 4.1.1.2 | ||
| 4.1.1.3 4.1.1.3 | ||
| 4.1.2 4.1.2 | ||
| 4.1.2.1 4.1.2.1 | ||
| 4.2.1 4.2.1 | ||
| 4.2.2 4.2.2 | ||
| 4.2.2.1 4.2.2.1 | ||
| 4.3.1 4.3.1 | ||
| 4.3.2 4.3.2 | ||
| 4.3.2.1 4.3.2.1 | ||
| 4.3.3 4.3.3 | ||
| 4.3.4 4.3.4 | ||
| 4.3.4.1 4.3.4.1 | ||
| 4.3.4.2 4.3.4.2 | ||
| 4.3.4.2.1 4.3.4.2.1 | ||
| 4.4.1 4.4.1 | ||
| 4.4.1.1 4.4.1.1 | ||
| 4.4.1.2 4.4.1.2 | ||
| 4.4.2 4.4.2 | ||
| 4.6.1 4.6.1 | ||
| 4.6.1.1 4.6.1.1 | ||
| 4.6.1.2 4.6.1.2 | ||
| 4.6.2 4.6.2 | ||
| 4.6.2.1 4.6.2.1 | ||
| 4.6.2.2 4.6.2.2 |
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