Fixes #25; Added QC test for mixed subtype due to positive and negati…

…ve tiles present for same target site Signed-off-by: pkruczkiewicz <peter.kruczkiewicz@canada.ca>
phac-nml · Jan 12, 2018 · 21ca172 · 21ca172
1 parent 042d626
commit 21ca172
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Showing 3 changed files with 465 additions and 2 deletions.
diff --git a/bio_hansel/qc/checks.py b/bio_hansel/qc/checks.py
@@ -89,7 +89,7 @@ def is_mixed_subtype(st: Subtype, df: DataFrame, *args) -> Tuple[Optional[str],
     return QC.FAIL, '{}: Mixed subtype detected. Positive and negative tiles detected for ' \
                     'the same target site "{}" for subtype "{}".'.format(
         QC.MIXED_SAMPLE_ERROR_2,
-        '; '.join(conflicting_tiles['refposition'].tolist()),
+        '; '.join(conflicting_tiles['refposition'].astype(str).tolist()),
         st.subtype)