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biohansel v2.2.0
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@Takadonet Takadonet released this 16 May 18:38
· 107 commits to master since this release
v2.2.0
4db666b
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Learn about vigilant mode.

Changes:

  • Adds ‘#N/A’ to the subtype column if no k-mers are found (#69)
  • New QC check for missing nested k-mers leading to the final subtype call (#88)
    • ex. all subtypes is 2, 2.2.2, 2.2.2.2, QC will return that you are missing subtype 2.2
  • New Feature: Degenerate Base Expansion for scheme k-mers using the IUPAC degenerate bases (#60)
    • ex. DAR = [‘AAA’, ‘AAG’, ‘GAA’, ‘GAG’, ‘TAA’, ‘TAG’]
  • New Schemes:
    • Typhi
    • Typhimurium
    • Mycobacterium Tuberculosis
  • Fixes:
    • Changed all mentions of ‘tile’ to ‘kmer’
    • Update enteritidis scheme to 1.0.7
    • Match positive k-mers first (#77)
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