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sistr_cmd v1.0.1

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@peterk87 peterk87 released this 23 May 07:02
· 54 commits to master since this release

Adds:

  • More genomes; 11k to 52790 (thanks Enterobase!)
  • Python tables (PyTables) dependency for HDF5 format reading
  • cgMLST profiles HDF5 file for faster reading and smaller file size than CSV

Updates:

  • cgMLST profiles and alleles databases
  • genome to serovar/subspecies tables
  • replaced two options for more verbose results with single option (--more-output/-M)
  • cleaned up and added new antigen alleles

Fixes:

  • Issue #19
  • cgMLST result parsing error (allele variable undefined)