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Unicode character read issue in ISA-Tab reader in docker image #1

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djcomlab opened this issue Feb 15, 2017 · 0 comments
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Unicode character read issue in ISA-Tab reader in docker image #1

djcomlab opened this issue Feb 15, 2017 · 0 comments
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@djcomlab
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4/5 tests fail in Jenkins on the container tests due to:

File "/usr/local/lib/python3.5/dist-packages/isatools/isatab.py", line 944, in _read_tab_section
    line = f.readline()
  File "/usr/lib/python3.5/encodings/ascii.py", line 26, in decode
    return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 2171: ordinal not in range(128)

Can't replicate locally, so likely a platform issue, and will need modifications to the ISA API code to ensure can be decoded more robustly.

@djcomlab djcomlab added the bug label Feb 15, 2017
@djcomlab djcomlab self-assigned this Feb 15, 2017
djcomlab added a commit to ISA-tools/isa-api that referenced this issue Mar 23, 2017
djcomlab added a commit to ISA-tools/isa-api that referenced this issue Mar 23, 2017
djcomlab added a commit that referenced this issue Mar 23, 2017
djcomlab added a commit to ISA-tools/isa-api that referenced this issue Mar 23, 2017
djcomlab added a commit that referenced this issue Mar 23, 2017
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