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jbradbury committed Jul 17, 2018
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## Short Description

Container to convert mzML files to MetFrag parameters used as direct input for MetFragCL.
Tool to convert mzML files to MetFrag parameters used as direct input for MetFragCL.

## Description

Native mzML files cannot be used directly to be processed by MetFrag which requires a conversion. Therefore this container used the Java implemented MetFragParameterExport (https://github.com/c-ruttkies/MetFragParameterExport) to retrieve the MS/MS spectra and additional parameters and convert them to MetFrag conform parameters. These parameters can be used as direct input for the MetFrag command line tool (https://github.com/c-ruttkies/MetFragRelaunched).
Native mzML files cannot be used directly to be processed by MetFrag, thus requiring a conversion. This tool uses the Java implemented MetFragParameterExport (https://github.com/c-ruttkies/MetFragParameterExport) to retrieve the MS/MS spectra and additional parameters and convert them to MetFrag compliant parameters. These parameters can then be used as direct input for the MetFrag command line tool (https://github.com/c-ruttkies/MetFragRelaunched).

## Issues

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