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App-SpaM #4
App-SpaM #4
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…logenetic Placement with filtered SPAced word Matches. Added Snakemake module for APPSPAM. Configured config for minimal running example.
…spam to unaligned reads.
…les for first and second example.
Fixed missing underscore in query_template for appspam.
Dear Matthias, |
@matthiasblanke Concerning the java side, yes please, do a pull request to this other repo. |
Thanks for the fast response. I did another PR at the PEWO_java repo with my changes - maybe they are unnecessary or there is a better way to do it though... If you need any help or more info please let me know. |
Oh, I see. |
Hello, |
Ah, I didn't notice those.. added it to the two config files; looks like it worked? |
Good point, we need to add this in the developer documentation. |
Change __author__ to Mathias Blanke
Hi everybody,
finally we have cleaned up App-SpaM and added it to bioconda. Hence, we would also appreciate to have it added to PEWO. AFAIK I followed all developer instructions, if you find any errors I should fix just let me know. I also had to make some small adjustments in the PEWO_java submodule but couldn't figure out how to include them here - should I just do another pull request at the other repo?