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fbielejec committed Dec 23, 2015
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Expand Up @@ -234,7 +234,7 @@ h4. merge time slices and continuous MCC tree

-merge -axisAttributes /home/filip/Dropbox/JavaProjects/Spread2/data/continuous/merge/mcctree.json -points /home/filip/Dropbox/JavaProjects/Spread2/data/continuous/merge/mcctree.json -lines /home/filip/Dropbox/JavaProjects/Spread2/data/continuous/merge/mcctree.json -areas /home/filip/Dropbox/JavaProjects/Spread2/data/continuous/merge/timeSlices.json -geojson /home/filip/Dropbox/JavaProjects/Spread2/data/continuous/merge/timeSlices.json -output /home/filip/merged.json

h4 Parse and merge multiple HPD levels (50, 75, 95) from continuous MCC tree
h4. Parse and merge multiple HPD levels (50, 75, 95) from continuous MCC tree

-parse -tree /home/filip/H3N2_mds.MCC.tre -xCoordinate antigenic2 -yCoordinate antigenic1 -mrsd 2011.1 -hpd 50 -output antigenic_50hpd.json
-parse -tree /home/filip/H3N2_mds.MCC.tre -xCoordinate antigenic2 -yCoordinate antigenic1 -mrsd 2011.1 -hpd 75 -output antigenic_75hpd.json
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