Releases: physimals/oxford_asl
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds fixes to ensure that motion and distortion corrections are applied prior to each model fitting run and calibration step.
Ubuntu 16.04
oxford_asl-3.9.16-ubuntu16.tar.gz
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds an option --gdcwarp to specify an additional nonlinear warp image in ASL space, primarily for gradient distortion correction.
Ubuntu 16.04
oxford_asl-3.9.15-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.15-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.15-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds improvements to final registration with partial volume correction
Ubuntu 16.04
oxford_asl-3.9.14-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.14-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.14-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release includes additional fixes to the GUI for the FSL course
Ubuntu 16.04
oxford_asl-3.9.13-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.13-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.13-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release includes fixes and improvements to the GUI for the FSL course
Ubuntu 16.04
Centos 7
oxford_asl-3.9.12-centos7.tar.gz
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release includes fixes and improvements to the GUI for the FSL course
Ubuntu 16.04
oxford_asl-3.9.11-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.11-centos7.tar.gz
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release includes a fix for the priors in the ASL model and an increase in the default number of iterations for the BASIL spatial step, to bring output in line with previous FSL release
Ubuntu 16.04
oxford_asl-3.9.10-ubuntu16.tar.gz
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release fixes running the GUI from the bundle which was broken in 3.9.8
Ubuntu 16.04
oxford_asl-3.9.9-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.9-centos7.tar.gz
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds fixes for oxford_asl and quasil.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds the --model-options switch to enable advanced model options to be provided to basil from oxford_asl
Ubuntu 16.04
oxford_asl-3.9.7-ubuntu.tar.gz