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Random failure of the test suite #837

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DamienCassou opened this issue Jul 2, 2020 · 3 comments
Open

Random failure of the test suite #837

DamienCassou opened this issue Jul 2, 2020 · 3 comments

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@DamienCassou
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Currently, nixpkgs has marked vdirsyncer as broken and recommends using spk@2c62d03. I'm trying to fix nixpkgs by updating the package for vdirsyncer from 0.16.7 to 0.16.8 + 3eb9ce5.

Unfortunately, even though the tests work for me, they fail for the PR reviewer.

Do you have any clue what this error message means:

=========================== short test summary info ============================
  FAILED tests/system/cli/test_sync.py::test_create_collections - hypothesis.er...
  ===== 1 failed, 370 passed, 115 skipped, 1841 warnings in 78.89s (0:01:18) =====
  make: *** [Makefile:62: test] Error 1
builder for '/nix/store/7hag97771kypmh1g56brsvnvrgjrgx3i-python3.8-vdirsyncer-0.16.8.drv' failed with exit code 2; last 10 log lines:

  tests/unit/sync/test_status.py::test_legacy_status[SqliteStatus]
    /nix/store/dilqhyr1nljs1xsn7237qr65j3z8kjs0-python3.8-hypothesis-5.11.0/lib/python3.8/site-packages/hypothesis/extra/pytestplugin.py:170: HypothesisDeprecationWarning: tests/unit/sync/test_status.py::test_legacy_status[SqliteStatus] uses the 'new_status' fixture, which is reset between function calls but not between test cases generated by `@given(...)`.  You can change it to a module- or session-scoped fixture if it is safe to reuse; if not we recommend using a context manager inside your test function.  See https://docs.pytest.org/en/latest/fixture.html#sharing-test-data for details on fixture scope.
      note_deprecation(msg % (fx.argname,), since="2020-02-29")

  -- Docs: https://docs.pytest.org/en/latest/warnings.html
  =========================== short test summary info ============================
  FAILED tests/system/cli/test_sync.py::test_create_collections - hypothesis.er...
  ==== 1 failed, 370 passed, 115 skipped, 22760 warnings in 269.58s (0:04:29) ====
  make: *** [Makefile:62: test] Error 1
cannot build derivation '/nix/store/j5niwjlini18smddzywpjwvpwrkprrls-env.drv': 2 dependencies couldn't be built
[0 built (2 failed)]
error: build of '/nix/store/j5niwjlini18smddzywpjwvpwrkprrls-env.drv' failed
https://github.com/NixOS/nixpkgs/pull/91918
2 packages failed to build:
python37Packages.vdirsyncerStable vdirsyncerStable
  • Your vdirsyncer version: 0.16.8 + 3eb9ce5
  • Your Python version: 3.8
  • Your operating system: NixOS
@WhyNotHugo
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Can you provide the output of python --version, pip freeze and env so I can try to reproduce this? I've no idea what's going on.

@DamienCassou
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DamienCassou commented Jul 4, 2020 •
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As you can read in my PR, I can successfully build the package but @loewenheim can't. With reproducibility as one of its main goals, Nix is supposed to give us the exact same software environment when building, ignoring our personal environment.

The recipe to build the package in my PR is quite simple. It contains DETERMINISTIC_TESTS=true though which I don't understand (it was there already).

Here is the requested log:

$ nix-shell --pure https://github.com/NixOS/nixpkgs/archive/0a8e6ae5093552a471c8e1027227d7d3988424b7.tar.gz -A python37Packages.vdirsyncerStable
nix-shell$ python --version
Python 3.7.7

nix-shell$ pip freeze
atomicwrites @ file:///build/atomicwrites-1.4.0/dist/atomicwrites-1.4.0-py2.py3-none-any.whl
attrs @ file:///build/attrs-19.3.0/dist/attrs-19.3.0-py2.py3-none-any.whl
blinker @ file:///build/blinker-1.4/dist/blinker-1.4-py3-none-any.whl
certifi @ file:///build/certifi-2020.4.5.1/dist/certifi-2020.4.5.1-py2.py3-none-any.whl
cffi @ file:///build/cffi-1.14.0/dist/cffi-1.14.0-cp37-cp37m-linux_x86_64.whl
chardet @ file:///build/chardet-3.0.4/dist/chardet-3.0.4-py2.py3-none-any.whl
click @ file:///build/click-7.1.2/dist/click-7.1.2-py2.py3-none-any.whl
click-log @ file:///build/click-log-0.3.2/dist/click_log-0.3.2-py2.py3-none-any.whl
click-threading @ file:///build/click-threading-0.4.4/dist/click_threading-0.4.4-py2.py3-none-any.whl
coverage @ file:///build/coverage-5.1/dist/coverage-5.1-cp37-cp37m-linux_x86_64.whl
cryptography @ file:///build/cryptography-2.9.2/dist/cryptography-2.9.2-cp37-cp37m-linux_x86_64.whl
ecdsa @ file:///build/ecdsa-0.15/dist/ecdsa-0.15-py2.py3-none-any.whl
hypothesis @ file:///build/source/hypothesis-python/dist/hypothesis-5.11.0-py3-none-any.whl
idna @ file:///build/idna-2.9/dist/idna-2.9-py2.py3-none-any.whl
importlib-metadata @ file:///build/importlib_metadata-1.6.0/dist/importlib_metadata-1.6.0-py2.py3-none-any.whl
itsdangerous @ file:///build/itsdangerous-1.1.0/dist/itsdangerous-1.1.0-py2.py3-none-any.whl
more-itertools @ file:///build/more-itertools-8.3.0/dist/more_itertools-8.3.0-py3-none-any.whl
oauthlib @ file:///build/source/dist/oauthlib-3.1.0.dev0-py2.py3-none-any.whl
packaging @ file:///build/packaging-20.4/dist/packaging-20.4-py2.py3-none-any.whl
pluggy @ file:///build/pluggy-0.13.1/dist/pluggy-0.13.1-py2.py3-none-any.whl
py @ file:///build/py-1.8.1/dist/py-1.8.1-py2.py3-none-any.whl
pyasn1 @ file:///build/pyasn1-0.4.8/dist/pyasn1-0.4.8-py2.py3-none-any.whl
pycparser @ file:///build/pycparser-2.20/dist/pycparser-2.20-py2.py3-none-any.whl
PyJWT @ file:///build/PyJWT-1.7.1/dist/PyJWT-1.7.1-py2.py3-none-any.whl
pyOpenSSL @ file:///build/pyOpenSSL-19.1.0/dist/pyOpenSSL-19.1.0-py2.py3-none-any.whl
pyparsing @ file:///build/source/dist/pyparsing-2.4.6-py2.py3-none-any.whl
PySocks @ file:///build/PySocks-1.7.1/dist/PySocks-1.7.1-py3-none-any.whl
pytest @ file:///build/pytest-5.4.3/dist/pytest-5.4.3-py3-none-any.whl
pytest-localserver @ file:///build/pytest-localserver-0.5.0/dist/pytest_localserver-0.5.0-py3-none-any.whl
pytest-subtesthack @ file:///build/pytest-subtesthack-0.1.1/dist/pytest_subtesthack-0.1.1-py3-none-any.whl
requests @ file:///build/requests-2.23.0/dist/requests-2.23.0-py2.py3-none-any.whl
requests-oauthlib @ file:///build/requests-oauthlib-1.3.0/dist/requests_oauthlib-1.3.0-py2.py3-none-any.whl
requests-toolbelt @ file:///build/requests-toolbelt-0.9.1/dist/requests_toolbelt-0.9.1-py2.py3-none-any.whl
setuptools-scm @ file:///build/setuptools_scm-4.1.2/dist/setuptools_scm-4.1.2-py2.py3-none-any.whl
six @ file:///build/six-1.15.0/dist/six-1.15.0-py2.py3-none-any.whl
sortedcontainers @ file:///build/sortedcontainers-2.1.0/dist/sortedcontainers-2.1.0-py3-none-any.whl
urllib3 @ file:///build/urllib3-1.25.9/dist/urllib3-1.25.9-py2.py3-none-any.whl
wcwidth @ file:///build/wcwidth-0.2.3/dist/wcwidth-0.2.3-py2.py3-none-any.whl
Werkzeug @ file:///build/Werkzeug-1.0.1/dist/Werkzeug-1.0.1-py2.py3-none-any.whl
zipp @ file:///build/zipp-3.1.0/dist/zipp-3.1.0-py3-none-any.whl

nix-shell$ env
propagatedBuildInputs=/nix/store/qvb2zv0kxa97186nkzyx91rz7ac34n3w-python3.7-click-7.1.2 /nix/store/15ky4xcq23wfs9vi1slamjs8bkmg9c8f-python3.7-click-log-0.3.2 /nix/store/0jggfcjdlbx6kcgbnbp2k92wxjq19a5a-python3.7-click-threading-0.4.4 /nix/store/drjri1h49cmpv54p5fwjmkjnzzll933y-python3.7-requests-toolbelt-0.9.1 /nix/store/v11lgqpcl5d8xim25msn21mjc5r9lckw-python3.7-requests-2.23.0 /nix/store/kc8sm42is9kikwxwkl5z6ln5fh4hssbi-python3.7-requests-oauthlib-1.3.0 /nix/store/78jqz31f89r4rj4lc5qz66wrg84zdj2d-python3.7-atomicwrites-1.4.0 /nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7
stdenv=/nix/store/ds7r5c4z1vzrm0jw7ay712zs59p64hf7-stdenv-linux
__ETC_PROFILE_SOURCED=1
LANG=C.UTF-8
DISPLAY=:0
version=0.16.8
installCheckPhase=make DETERMINISTIC_TESTS=true test

GPG_TTY=/dev/pts/13
out=/nix/store/r9a0lpxxwwcp496y2igxhd3dhvflszk8-python3.7-vdirsyncer-0.16.8
src=/nix/store/bfga5fav607zcngdwml8059f8njj3v2z-vdirsyncer-0.16.8.tar.gz
CONFIG_SHELL=/nix/store/ypag3bh7y7i15xf24zihr343wi6x5i6g-bash-4.4-p23/bin/bash
buildInputs=
builder=/nix/store/ypag3bh7y7i15xf24zihr343wi6x5i6g-bash-4.4-p23/bin/bash
CC=gcc
READELF=readelf
USER=cassou
PAGER=less -R
PYTHONHASHSEED=0
STRIP=strip
depsBuildTarget=
OBJCOPY=objcopy
NIX_CC_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu=1
propagatedNativeBuildInputs=
PYTHONNOUSERSITE=1
postFixup=wrapPythonPrograms

depsTargetTarget=
disallowedReferences=
system=x86_64-linux
PWD=/home/cassou
HOME=/home/cassou
TMP=/run/user/1000
strictDeps=1
dontUsePythonRecompileBytecode=1
pname=vdirsyncer
NIX_ENFORCE_NO_NATIVE=1
RANLIB=ranlib
OBJDUMP=objdump
AS=as
AR=ar
SSL_CERT_FILE=/no-cert-file.crt
NIX_CC=/nix/store/x45gpnpvbq0l3b933k187qh53y1fg7ll-gcc-wrapper-9.3.0
NIX_CFLAGS_COMPILE= -isystem /nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/include -isystem /nix/store/4r3cky697s6gz54a5dx6740dwa7jq1af-libffi-3.3-dev/include
depsBuildBuild=
NIX_STORE=/nix/store
outputs=out
configureFlags=
DETERMINISTIC_BUILD=1
TMPDIR=/run/user/1000
name=python3.7-vdirsyncer-0.16.8
doInstallCheck=1
doCheck=
IN_NIX_SHELL=pure
NIX_BINTOOLS=/nix/store/gx2r9xhby24ypk0n8ni3dxljm8mrka53-binutils-wrapper-2.31.1
NM=nm
depsHostHostPropagated=
CXX=g++
depsBuildBuildPropagated=
SHELL=/nix/store/x4gd806afbgx0ag1jf8y7blzrrhiyx8q-bash-interactive-4.4-p23/bin/bash
TERM=xterm-256color
NIX_LDFLAGS=-rpath /nix/store/r9a0lpxxwwcp496y2igxhd3dhvflszk8-python3.7-vdirsyncer-0.16.8/lib64 -rpath /nix/store/r9a0lpxxwwcp496y2igxhd3dhvflszk8-python3.7-vdirsyncer-0.16.8/lib  -L/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/lib -L/nix/store/gbwpr7mphpk1fyfz1dn05n2i00aspwfl-libffi-3.3/lib
TEMPDIR=/run/user/1000
shell=/nix/store/ypag3bh7y7i15xf24zihr343wi6x5i6g-bash-4.4-p23/bin/bash
NIX_BINTOOLS_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu=1
NIX_HARDENING_ENABLE=fortify stackprotector pic strictoverflow format relro bindnow
NIX_INDENT_MAKE=1
NIX_SSL_CERT_FILE=/no-cert-file.crt
SHLVL=4
PYTHONPATH=/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/lib/python3.7/site-packages:/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/lib/python3.7/site-packages:/nix/store/y46lin5dp8risf6sp7pb1alnqa4vg9vq-python3.7-setuptools-46.1.3/lib/python3.7/site-packages:/nix/store/y46lin5dp8risf6sp7pb1alnqa4vg9vq-python3.7-setuptools-46.1.3/lib/python3.7/site-packages:/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/lib/python3.7/site-packages:/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7/lib/python3.7/site-packages:/nix/store/h1j4faqxsh7mhqgr37b6clqf00rnakms-python3.7-wheel-0.33.6/lib/python3.7/site-packages:/nix/store/h1j4faqxsh7mhqgr37b6clqf00rnakms-python3.7-wheel-0.33.6/lib/python3.7/site-packages:/nix/store/i92pj1x2fzl9zdm7gaap1rf7c2s59k1a-python3.7-pip-20.1.1/lib/python3.7/site-packages:/nix/store/i92pj1x2fzl9zdm7gaap1rf7c2s59k1a-python3.7-pip-20.1.1/lib/python3.7/site-packages:/nix/store/q2cfd4y04vsb9sx87i6qjs33fpscp0v8-python3.7-setuptools_scm-4.1.2/lib/python3.7/site-packages:/nix/store/q2cfd4y04vsb9sx87i6qjs33fpscp0v8-python3.7-setuptools_scm-4.1.2/lib/python3.7/site-packages:/nix/store/4wj26hranp62j09cazrssmkkq2zfwzyr-python3.7-hypothesis-5.11.0/lib/python3.7/site-packages:/nix/store/4wj26hranp62j09cazrssmkkq2zfwzyr-python3.7-hypothesis-5.11.0/lib/python3.7/site-packages:/nix/store/4hw563pg77nq7lfysqyk124y5a7ld4sf-python3.7-attrs-19.3.0/lib/python3.7/site-packages:/nix/store/4hw563pg77nq7lfysqyk124y5a7ld4sf-python3.7-attrs-19.3.0/lib/python3.7/site-packages:/nix/store/i7l1jlzqjrwfwnyb2nw2hc2nd0zc6dbf-python3.7-coverage-5.1/lib/python3.7/site-packages:/nix/store/i7l1jlzqjrwfwnyb2nw2hc2nd0zc6dbf-python3.7-coverage-5.1/lib/python3.7/site-packages:/nix/store/jf2bb0fg882kazvzmha02413agh8z3nb-python3.7-sortedcontainers-2.1.0/lib/python3.7/site-packages:/nix/store/jf2bb0fg882kazvzmha02413agh8z3nb-python3.7-sortedcontainers-2.1.0/lib/python3.7/site-packages:/nix/store/zpxf7v2rxzr6dv1rgr2wr7lg33mwai03-python3.7-pytest-5.4.3/lib/python3.7/site-packages:/nix/store/zpxf7v2rxzr6dv1rgr2wr7lg33mwai03-python3.7-pytest-5.4.3/lib/python3.7/site-packages:/nix/store/8jwdi7n8hfxjvqq9f3nb1vj2pqlinqqy-python3.7-py-1.8.1/lib/python3.7/site-packages:/nix/store/8jwdi7n8hfxjvqq9f3nb1vj2pqlinqqy-python3.7-py-1.8.1/lib/python3.7/site-packages:/nix/store/xib62ic0nh7w6j7nvc9myj9sjwfmzm2n-python3.7-six-1.15.0/lib/python3.7/site-packages:/nix/store/xib62ic0nh7w6j7nvc9myj9sjwfmzm2n-python3.7-six-1.15.0/lib/python3.7/site-packages:/nix/store/hn73yvsa6y5ypc7c6x3fh3iysca0z2s3-python3.7-pluggy-0.13.1/lib/python3.7/site-packages:/nix/store/hn73yvsa6y5ypc7c6x3fh3iysca0z2s3-python3.7-pluggy-0.13.1/lib/python3.7/site-packages:/nix/store/dk6z2pa9ykr99jkns6cp8z3ihqm4vvzj-python3.7-importlib-metadata-1.6.0/lib/python3.7/site-packages:/nix/store/dk6z2pa9ykr99jkns6cp8z3ihqm4vvzj-python3.7-importlib-metadata-1.6.0/lib/python3.7/site-packages:/nix/store/qmblfcav4irjwj200w7flk0m90gxxcci-python3.7-zipp-3.1.0/lib/python3.7/site-packages:/nix/store/qmblfcav4irjwj200w7flk0m90gxxcci-python3.7-zipp-3.1.0/lib/python3.7/site-packages:/nix/store/58xns2vg7q4f3jxnx6zanvsfa17rd9iz-python3.7-more-itertools-8.3.0/lib/python3.7/site-packages:/nix/store/58xns2vg7q4f3jxnx6zanvsfa17rd9iz-python3.7-more-itertools-8.3.0/lib/python3.7/site-packages:/nix/store/58xns2vg7q4f3jxnx6zanvsfa17rd9iz-python3.7-more-itertools-8.3.0/lib/python3.7/site-packages:/nix/store/58xns2vg7q4f3jxnx6zanvsfa17rd9iz-python3.7-more-itertools-8.3.0/lib/python3.7/site-packages:/nix/store/78jqz31f89r4rj4lc5qz66wrg84zdj2d-python3.7-atomicwrites-1.4.0/lib/python3.7/site-packages:/nix/store/78jqz31f89r4rj4lc5qz66wrg84zdj2d-python3.7-atomicwrites-1.4.0/lib/python3.7/site-packages:/nix/store/mb97785bkwhsgqhqbxq8j6v02v7q36pf-python3.7-wcwidth-0.2.3/lib/python3.7/site-packages:/nix/store/mb97785bkwhsgqhqbxq8j6v02v7q36pf-python3.7-wcwidth-0.2.3/lib/python3.7/site-packages:/nix/store/c3wbaw2n6pllnngj2dq8dwr21p5bks5c-python3.7-packaging-20.4/lib/python3.7/site-packages:/nix/store/c3wbaw2n6pllnngj2dq8dwr21p5bks5c-python3.7-packaging-20.4/lib/python3.7/site-packages:/nix/store/7isscjdq56852a3dcvszkl5xg6ym4cqi-python3.7-pyparsing-2.4.6/lib/python3.7/site-packages:/nix/store/7isscjdq56852a3dcvszkl5xg6ym4cqi-python3.7-pyparsing-2.4.6/lib/python3.7/site-packages:/nix/store/bb7an5izb7zncaldxwqhhqdq5nsla95x-python3.7-pytest-localserver-0.5.0/lib/python3.7/site-packages:/nix/store/bb7an5izb7zncaldxwqhhqdq5nsla95x-python3.7-pytest-localserver-0.5.0/lib/python3.7/site-packages:/nix/store/b1xq8g6mj625j842a09mv9hrc6x91h03-python3.7-Werkzeug-1.0.1/lib/python3.7/site-packages:/nix/store/b1xq8g6mj625j842a09mv9hrc6x91h03-python3.7-Werkzeug-1.0.1/lib/python3.7/site-packages:/nix/store/s6r0z2dyf0l24kpwakwpr9fahj2xmipg-python3.7-itsdangerous-1.1.0/lib/python3.7/site-packages:/nix/store/s6r0z2dyf0l24kpwakwpr9fahj2xmipg-python3.7-itsdangerous-1.1.0/lib/python3.7/site-packages:/nix/store/3mvhc57cikgafr5vs90p9iaxxgxjnnik-python3.7-pytest-subtesthack-0.1.1/lib/python3.7/site-packages:/nix/store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NIX_BUILD_CORES=8
SOURCE_DATE_EPOCH=1
TEMP=/run/user/1000
STRINGS=strings
LOGNAME=cassou
depsHostHost=
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NIX_BUILD_TOP=/run/user/1000
depsBuildTargetPropagated=
SIZE=size
nativeBuildInputs=/nix/store/73iskwap4wblkwbq2jy9cndmrn49n6ss-python3-3.7.7 /nix/store/m0sz6wch9545011hplc0npbyrnj6d0k5-hook /nix/store/0w98m50npjxx5s1g293yz8g05f81m8f3-hook /nix/store/izmwmiilqrs49vfvzissmm39wsksxdhy-python-recompile-bytecode-hook /nix/store/mz73xmmxgdgf9mvam048pva8j8l06spy-python-remove-tests-dir-hook /nix/store/y46lin5dp8risf6sp7pb1alnqa4vg9vq-python3.7-setuptools-46.1.3 /nix/store/x8riqcxnyb8rbzfcrar4xlvmavq7qsqf-python-catch-conflicts-hook /nix/store/d95df6vfdhq7qz4hp23vcxh8dcm21wvq-python-remove-bin-bytecode-hook /nix/store/sxgm6jnd8sncsbhjbmgljs7cbxlflscq-setuptools-setup-hook /nix/store/509yy7v3hnkxq4sbdfmyf13w4rnsbs6b-pip-install-hook /nix/store/z86i8wv2gwckk61vip3i53v8r7h2q20y-python-imports-check-hook.sh /nix/store/14jlnx893rg27rcsig3yymv88477w9lg-python-namespaces-hook.sh /nix/store/q2cfd4y04vsb9sx87i6qjs33fpscp0v8-python3.7-setuptools_scm-4.1.2 /nix/store/hmphwsjwiidrsdcil1hb62yzr2fgq3g9-setuptools-check-hook /nix/store/4wj26hranp62j09cazrssmkkq2zfwzyr-python3.7-hypothesis-5.11.0 /nix/store/zpxf7v2rxzr6dv1rgr2wr7lg33mwai03-python3.7-pytest-5.4.3 /nix/store/bb7an5izb7zncaldxwqhhqdq5nsla95x-python3.7-pytest-localserver-0.5.0 /nix/store/3mvhc57cikgafr5vs90p9iaxxgxjnnik-python3.7-pytest-subtesthack-0.1.1
LD=ld
patches=/nix/store/mf2rpr5chbgghv6mfd9c08i1b3j4c1kv-3eb9ce5ae4320d52e6c876874511ff96a8a45f51.patch
depsTargetTargetPropagated=
_=/nix/store/66hc282zl28zfr8727i681vz23bqwp16-coreutils-8.31/bin/env

@DamienCassou
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There is some more log from @loewenheim in NixOS/nixpkgs#91918 (comment).

This was referenced Nov 28, 2020
Merged
Merged
mweinelt pushed a commit to NixOS/nixpkgs that referenced this issue Nov 28, 2020
@wirew0rm
vdirsyncer: disable flaky test
64a59a0 
Disables sync_test:test_create_collection, a flaky test which exceeds its
deadline and breaks the build on hydra, e.g:
https://hydra.nixos.org/build/130683519/nixlog/1

Upstream vdirsyncer issue: pimutils/vdirsyncer#837
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@DamienCassou @WhyNotHugo