CRISPRessoPooled --compile_postrun_references bug fixes

pinellolab · Aug 9, 2023 · 2b36a1a · 2b36a1a
1 parent 3e04d1d
commit 2b36a1a
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/CRISPResso2/CRISPRessoPooledCORE.py b/CRISPResso2/CRISPRessoPooledCORE.py
@@ -1634,15 +1634,15 @@ def default_sigpipe():
                 this_freqs = []
                 this_names = []
                 with zipfile.ZipFile(allele_frequency_table_zip_filename, 'r') as archive:
-                    with archive.open(run_data['allele_frequency_table_filename'], 'r') as f:
-                        head = f.readline()
+                    with archive.open(run_data['running_info']['allele_frequency_table_filename'], 'r') as f:
+                        head = f.readline().decode('UTF-8')
                         head_els = head.rstrip().split("\t")
                         allele_ind = head_els.index('Aligned_Sequence')
                         freq_ind = head_els.index('%Reads')
 
                         new_allele_idx = 1
                         for line in f:
-                            line_els = line.split('\t')
+                            line_els = line.decode('UTF-8').split('\t')
                             allele_seq = line_els[allele_ind].replace('-', '')
                             allele_freq = float(line_els[freq_ind])
                             #add first allele -- then add other alleles if they are more frequent than the cutoff

diff --git a/CRISPResso2/CRISPRessoShared.py b/CRISPResso2/CRISPRessoShared.py
@@ -23,7 +23,7 @@
 from CRISPResso2 import CRISPResso2Align
 from CRISPResso2 import CRISPRessoCOREResources
 
-__version__ = "2.2.13"
+__version__ = "2.2.14"
 
 
 ###EXCEPTIONS############################