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29 Open 239 Closed
29 Open 239 Closed
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Issues list

Singularity/Apptainer image constructed from docker hub file functions in local development environment but produces error on compute cluster
#488 opened Sep 12, 2024 by jleehan
1
Nanopore data analysis enhancement New feature or request
#484 opened Sep 3, 2024 by enc-kcotto
1
amplicon for Targeted Sequencing
#475 opened Aug 16, 2024 by tangxj98
14
CRISPRessoAggregate failure
#469 opened Aug 8, 2024 by enc-kcotto
4
Question about CRISPResso for WGS - and potential feature
#442 opened Jun 12, 2024 by tanyasarkjain
1
ERROR: NUMPY RELATED
#437 opened May 19, 2024 by ZhongxuanZhang
1
CRISPRessoAgregate
#435 opened May 14, 2024 by xguo-nveloptx
1
ERROR: Offset around cut would be greater than reference sequence length.
#433 opened May 11, 2024 by albustruong
2
CRISPResso2 cannot handle drop out deletions between two target sites, apparently
#387 opened Mar 7, 2024 by GreenSeaBug
1
Calculating deletion frequency (het/hom)
#382 opened Feb 29, 2024 by olu2016
2
Merge, Split, and Analyze with CRISPResso2
#379 opened Feb 19, 2024 by modifiedplant
3
https is not working
#366 opened Jan 8, 2024 by nephantes
1
CRISPRessoPooled with --alternate_alleles
#358 opened Dec 4, 2023 by GreenSeaBug
2
Substitutions and N's outside quantification window counted in alleles frequency table
#356 opened Nov 29, 2023 by GreenSeaBug
8
Support for Oxford Nanopore?
#309 opened Jun 23, 2023 by cdustinr
1
Cannot run Crispresso2 with more then one pegRNA, pegRNA_extension and ngRNA enhancement New feature or request
#232 opened Jul 18, 2022 by JH1606-code
1
CRISPRessoCompare for base editor
#227 opened Jun 27, 2022 by jykr
quantification window ERROR and invalid characters ERROR when using prime-edit
#202 opened Feb 24, 2022 by Masterchiefm
2
match dsODN sequences enhancement New feature or request
#201 opened Feb 17, 2022 by YichaoOU
2
Batch CRISPRessoPooled enhancement New feature or request
#198 opened Feb 11, 2022 by jsacco1
1
Possibility of filtering reads based on phred score of selected basepairs enhancement New feature or request
#179 opened Dec 8, 2021 by caspl1
5
CRISPResso2 Compare interpretation
#139 opened Aug 27, 2021 by JAVI5G
just align (not global alignment) PE reads (without FLASH) to the amplicon sequence and quantify indel rate? enhancement New feature or request
#120 opened Aug 5, 2021 by YichaoOU
7
Show trimmomatic errors/warnings in main console prints enhancement New feature or request
#111 opened Jul 8, 2021 by NikdAK
Include tool in Galaxy WfMS
#92 opened Apr 14, 2021 by ieguinoa
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