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train mono / neu / multi subsets of larry #225

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merged 2 commits into from
Apr 27, 2023

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@lijc0804 lijc0804 marked this pull request as ready for review April 27, 2023 01:46
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codecov bot commented Apr 27, 2023

Codecov Report

Merging #225 (8799716) into master (9ee355a) will decrease coverage by 0.08%.
The diff coverage is 0.00%.

❗ Current head 8799716 differs from pull request most recent head 9316c95. Consider uploading reports for the commit 9316c95 to get more accurate results

@@            Coverage Diff             @@
##           master     #225      +/-   ##
==========================================
- Coverage   19.69%   19.62%   -0.08%     
==========================================
  Files          28       28              
  Lines        3285     3297      +12     
  Branches      436      438       +2     
==========================================
  Hits          647      647              
- Misses       2629     2641      +12     
  Partials        9        9              
Impacted Files Coverage Δ
pyrovelocity/config.py 32.43% <ø> (ø)
pyrovelocity/data.py 14.28% <0.00%> (-1.72%) ⬇️

@cameronraysmith cameronraysmith added the enhancement New feature or request label Apr 27, 2023
@cameronraysmith cameronraysmith added this to the 0.1.3 milestone Apr 27, 2023
@cameronraysmith cameronraysmith linked an issue Apr 27, 2023 that may be closed by this pull request
@cameronraysmith cameronraysmith changed the title add pipeline stages for mono / neu / multilineage lineages on larry dataset train mono / neu / multilineage subsets of larry Apr 27, 2023
@cameronraysmith cameronraysmith changed the title train mono / neu / multilineage subsets of larry train mono / neu / multi subsets of larry Apr 27, 2023
@cameronraysmith cameronraysmith linked an issue Apr 27, 2023 that may be closed by this pull request
@cameronraysmith cameronraysmith self-assigned this Apr 27, 2023
@cameronraysmith cameronraysmith merged commit 595e849 into pinellolab:master Apr 27, 2023
larry_multilineage=create_dataset_config(
"larry_multilineage",
dl_root="${data_external.root_path}",
data_file="larry_mono.h5ad",
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@qinqian @lijc0804 should have been larry_multilineage.h5ad

"larry_multilineage",
dl_root="${data_external.root_path}",
data_file="larry_mono.h5ad",
rel_path="${data_external.root_path}/larry_mono.h5ad",
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@qinqian @lijc0804 should have been larry_multilineage.h5ad

cameronraysmith pushed a commit that referenced this pull request Jan 3, 2024
* train larry mono and neu
* train larry multilineage

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Co-authored-by: Jiachen Li <lijc0804@gmail.com>
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process and train larry mono/neu/multilineage data sets
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