one more try to see if reduced precision fixes CI

pinin4fjords · Nov 21, 2022 · 9362ef6 · 9362ef6
1 parent 59bac88
commit 9362ef6
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diff --git a/modules/nf-core/deseq2/differential/templates/deseq_de.R b/modules/nf-core/deseq2/differential/templates/deseq_de.R
@@ -60,7 +60,7 @@ read_delim_flexible <- function(file, header = TRUE, row.names = NULL){
 #'
 #' @return output Data frame
 
-round_dataframe_columns <- function(df, columns = NULL, digits = 7){
+round_dataframe_columns <- function(df, columns = NULL, digits = 6){
     if (is.null(columns)){
         columns <- colnames(df)
     }

diff --git a/tests/modules/nf-core/deseq2/differential/test.yml b/tests/modules/nf-core/deseq2/differential/test.yml
@@ -5,15 +5,15 @@
     - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
+      md5sum: 279b4b8068bf6120adea9af9e016854a
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
       md5sum: 835dd0c35bb59504348c534d83220962
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: d9f88e278ff0e075f4f9171c02d84c13
+      md5sum: 0e3118a5818d4b72d5b5f6bd5d00117e
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
@@ -28,21 +28,21 @@
     - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: f8afccfcc81c187d46a648cc1fbac668
+      md5sum: a111728c24aa705d68fd10c82dbb2a3e
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 1708374146b4e8c28fbc78fa292102cd
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 1c9c7ee4ca90ff0d91ae16dbfd64fdc9
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
-      md5sum: 68a4068331d67a9767aafe3f6fa40360
+      md5sum: 598e74a8e93f06ac7ada9018c3608e00
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: b18a7320ae857283c82ea6ff859302d0
+      md5sum: 51ca7684a74710474abd2569000ceb15
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 1708374146b4e8c28fbc78fa292102cd
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 1c9c7ee4ca90ff0d91ae16dbfd64fdc9
     - path: output/deseq2/treatment-mCherry-hND6.rlog.tsv
-      md5sum: 68a4068331d67a9767aafe3f6fa40360
+      md5sum: 598e74a8e93f06ac7ada9018c3608e00
     - path: output/spoof/spikes.txt
       md5sum: 8bd8a80b4616fc0a68f69bee6869c8bc
 
@@ -53,15 +53,15 @@
     - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: ac6fa7f3dcd4fa3cfa20c0ed2a618f30
+      md5sum: 6d2b0528dcd3f584d24b52db7219bacf
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: a526a1bb5cb270f5a4a1641fefd289b3
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: bb916c41f91b2ddcc9607619a023ef44
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
       md5sum: 8b2be7f2ec5000cc4d3f795a41d40e77
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: 8dcdcedd79b27eb490bf43f3d7b74151
+      md5sum: ebad62219b96eb48123ad625a86fc604
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: a526a1bb5cb270f5a4a1641fefd289b3
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
@@ -78,15 +78,15 @@
     - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
+      md5sum: 279b4b8068bf6120adea9af9e016854a
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.rlog.tsv
       md5sum: 835dd0c35bb59504348c534d83220962
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: d9f88e278ff0e075f4f9171c02d84c13
+      md5sum: 0e3118a5818d4b72d5b5f6bd5d00117e
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
@@ -103,18 +103,18 @@
     - deseq2
   files:
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.results.tsv
-      md5sum: a00c45695c7ded0a3fe283badb0ff6aa
+      md5sum: 279b4b8068bf6120adea9af9e016854a
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6-sample_number.vst.tsv
-      md5sum: a1e398efc1aa7c468a56fc34e0482bf3
+      md5sum: 86146eea79b145810755548706bbc52c
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.results.tsv
-      md5sum: d9f88e278ff0e075f4f9171c02d84c13
+      md5sum: 0e3118a5818d4b72d5b5f6bd5d00117e
     - path: output/deseq2/treatment-mCherry-hND6.deseq2.sizefactors.tsv
       md5sum: 6332f21889ecac387bb12eeb04f23849
     - path: output/deseq2/treatment-mCherry-hND6.normalised_counts.tsv
       md5sum: 827cdf01f366d72d6e4b500e9862ba74
     - path: output/deseq2/treatment-mCherry-hND6.vst.tsv
-      md5sum: a1e398efc1aa7c468a56fc34e0482bf3
+      md5sum: 86146eea79b145810755548706bbc52c