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| **/CMakeLists.txt.user | ||
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| # Python folder | ||
| **/__pycache__ | ||
| **/__pycache__ | ||
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| # Python byte code | ||
| *.pyc | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,151 @@ | ||
| 1 | all | | synonym | | ||
| 1 | root | | scientific name | | ||
| 1052684 | Paenibacillus polymyxa M1 | | scientific name | | ||
| 1052684 | Paenibacillus polymyxa strain M1 | | equivalent name | | ||
| 1052684 | Paenibacillus polymyxa str. M1 | | equivalent name | | ||
| 1224 | Alphaproteobacteraeota Oren et al. 2015 | | authority | | ||
| 1224 | Alphaproteobacteraeota | | synonym | | ||
| 1224 | not Proteobacteria Cavalier-Smith 2002 | | authority | | ||
| 1224 | Proteobacteria [class] Stackebrandt et al. 1988 | | authority | | ||
| 1224 | Proteobacteria Garrity et al. 2005 | | authority | | ||
| 1224 | proteobacteria | proteobacteria<blast1224> | blast name | | ||
| 1224 | Proteobacteria | | scientific name | | ||
| 1224 | purple bacteria and relatives | | common name | | ||
| 1224 | purple bacteria | | common name | | ||
| 1224 | purple non-sulfur bacteria | | common name | | ||
| 1224 | purple photosynthetic bacteria and relatives | | common name | | ||
| 1224 | purple photosynthetic bacteria | | common name | | ||
| 1236 | Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013 | | authority | | ||
| 1236 | Gammaproteobacteria | | scientific name | | ||
| 1236 | gamma proteobacteria | | synonym | | ||
| 1236 | gamma subdivision | | synonym | | ||
| 1236 | gamma subgroup | | synonym | | ||
| 1236 | g-proteobacteria | | blast name | | ||
| 1236 | Proteobacteria gamma subdivision | | synonym | | ||
| 1236 | Purple bacteria, gamma subdivision | | synonym | | ||
| 1239 | Bacillaeota Oren et al. 2015 | | authority | | ||
| 1239 | Bacillaeota | | synonym | | ||
| 1239 | Bacillus/Clostridium group | | synonym | | ||
| 1239 | clostridial firmicutes | | synonym | | ||
| 1239 | Clostridium group firmicutes | | synonym | | ||
| 1239 | Firmacutes | | synonym | | ||
| 1239 | Firmicutes corrig. Gibbons and Murray 1978 | | authority | | ||
| 1239 | firmicutes | firmicutes <blast1239> | blast name | | ||
| 1239 | Firmicutes | | scientific name | | ||
| 1239 | Gram-positive bacteria | | genbank common name | | ||
| 1239 | Gram positive bacteria | | misspelling | | ||
| 1239 | Low G+C firmicutes | | synonym | | ||
| 1239 | low GC Gram+ | | common name | | ||
| 1239 | low G+C Gram-positive bacteria | | common name | | ||
| 131567 | biota | | synonym | | ||
| 131567 | cellular organisms | | scientific name | | ||
| 1385 | Bacillales Prevot 1953 | | authority | | ||
| 1385 | Bacillales | | scientific name | | ||
| 1385 | Bacillus/Staphylococcus group | | synonym | | ||
| 1406 | "Aerobacillus polymyxa" (Prazmowski 1880) Donker 1926 | | authority | | ||
| 1406 | Aerobacillus polymyxa | | synonym | | ||
| 1406 | ATCC 842 | | type material | | ||
| 1406 | Bacillus polymyxa (Prazmowski 1880) Mace 1889 (Approved Lists 1980) | | authority | | ||
| 1406 | Bacillus polymyxa | | synonym | | ||
| 1406 | Bacillus sp. NCIM 2538 | | includes | | ||
| 1406 | Bacillus sp. NCIM 2540 | | includes | | ||
| 1406 | Bacillus sp. NCIM 2726 | | includes | | ||
| 1406 | Bacillus sp. RP 2.2 | | includes | | ||
| 1406 | CCUG 7426 | | type material | | ||
| 1406 | CFBP 4258 | | type material | | ||
| 1406 | CIP 66.22 | | type material | | ||
| 1406 | "Clostridium polymyxa" Prazmowski 1880 | | authority | | ||
| 1406 | Clostridium polymyxa | | synonym | | ||
| 1406 | DSM 36 | | type material | | ||
| 1406 | "Granulobacter polymyxa" (Prazmowski 1880) Beijerinck 1893 | | authority | | ||
| 1406 | Granulobacter polymyxa | | synonym | | ||
| 1406 | HAMBI 1897 | | type material | | ||
| 1406 | HAMBI 635 | | type material | | ||
| 1406 | IAM 13419 | | type material | | ||
| 1406 | IFO 15309 | | type material | | ||
| 1406 | JCM 2507 | | type material | | ||
| 1406 | LMG 13294 | | type material | | ||
| 1406 | NBRC 15309 | | type material | | ||
| 1406 | NCCB 24016 | | type material | | ||
| 1406 | NCTC 10343 | | type material | | ||
| 1406 | NRRL B-4317 | | type material | | ||
| 1406 | Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994 | | authority | | ||
| 1406 | Paenibacillus polymyxa | | scientific name | | ||
| 1406 | Paenibacillus sp. JCM 8035 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8036 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8037 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8038 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8039 | | includes | | ||
| 1406 | Paenibacillus sp. WLY78 | | includes | | ||
| 1406 | VKM B-514 | | type material | | ||
| 1783272 | Terrabacteria group | | scientific name | | ||
| 186822 | Paenibacillaceae De Vos et al. 2010 | | authority | | ||
| 186822 | Paenibacillaceae | | scientific name | | ||
| 2 | bacteria | bacteria <blast2> | blast name | | ||
| 2 | Bacteria | Bacteria <prokaryotes> | scientific name | | ||
| 2 | eubacteria | | genbank common name | | ||
| 2 | Monera | Monera <Bacteria> | in-part | | ||
| 2 | not Bacteria Haeckel 1894 | | synonym | | ||
| 2 | Procaryotae | Procaryotae <Bacteria> | in-part | | ||
| 2 | Prokaryotae | Prokaryotae <Bacteria> | in-part | | ||
| 2 | Prokaryota | Prokaryota <Bacteria> | in-part | | ||
| 2 | prokaryote | prokaryote <Bacteria> | in-part | | ||
| 2 | prokaryotes | prokaryotes <Bacteria> | in-part | | ||
| 204458 | Caulobacterales Henrici and Johnson 1935 | | authority | | ||
| 204458 | Caulobacterales | | scientific name | | ||
| 204458 | Caulobacter group | | synonym | | ||
| 28211 | "Alphabacteria" Cavalier-Smith 1992 | | authority | | ||
| 28211 | Alphabacteria Cavalier-Smith 2002 | | authority | | ||
| 28211 | Alphabacteria | | synonym | | ||
| 28211 | Alphaproteobacteria Garrity et al. 2006 | | authority | | ||
| 28211 | Alphaproteobacteria | | scientific name | | ||
| 28211 | alpha proteobacteria | | synonym | | ||
| 28211 | alpha subdivision | | synonym | | ||
| 28211 | alpha subgroup | | synonym | | ||
| 28211 | a-proteobacteria | | blast name | | ||
| 28211 | Proteobacteria alpha subdivision | | synonym | | ||
| 28211 | Purple bacteria, alpha subdivision | | synonym | | ||
| 366602 | Caulobacter sp. K31 | | scientific name | | ||
| 44249 | Bacillus polymyxa group | | synonym | | ||
| 44249 | Paenibacillus Ash et al. 1994 emend. Behrendt et al. 2010 | | authority | | ||
| 44249 | Paenibacillus Ash et al. 1994 emend. Shida et al. 1997 | | authority | | ||
| 44249 | Paenibacillus | | scientific name | | ||
| 44249 | rRNA group 3 bacilli | | synonym | | ||
| 468 | Acinetobacteraceae | | synonym | | ||
| 468 | Branhamaceae | | synonym | | ||
| 468 | Moraxellaceae Rossau et al. 1991 | | authority | | ||
| 468 | Moraxellaceae | | scientific name | | ||
| 469 | Acinetobacter Brisou and Prevot 1954 | | authority | | ||
| 469 | Acinetobacter | | scientific name | | ||
| 470 | Acinetobacter baumanii | | misspelling | | ||
| 470 | Acinetobacter baumannii Bouvet and Grimont 1986 | | authority | | ||
| 470 | Acinetobacter baumannii | | scientific name | | ||
| 470 | Acinetobacter baumanni | | misspelling | | ||
| 470 | Acinetobacter genomosp. 2 | | synonym | | ||
| 470 | Acinetobacter genomospecies 2 | | synonym | | ||
| 470 | ATCC 19606 | | type material | | ||
| 470 | Bacterium anitratum | | synonym | | ||
| 470 | CCUG 19096 | | type material | | ||
| 470 | CIP 70.34 | | type material | | ||
| 470 | DSM 30007 | | type material | | ||
| 470 | JCM 6841 | | type material | | ||
| 470 | LMG 1041 | | type material | | ||
| 470 | NCCB 85021 | | type material | | ||
| 470 | NCTC 12156 | | type material | | ||
| 696749 | Acinetobacter baumannii 1656-2 | | scientific name | | ||
| 696749 | Acinetobacter baumannii str. 1656-2 | | equivalent name | | ||
| 696749 | Acinetobacter baumannii strain 1656-2 | | equivalent name | | ||
| 72274 | gamma-3 proteobacteria | gamma-3 proteobacteria <#4> | in-part | | ||
| 72274 | Pseudomonaceae/Moraxellaceae group | | synonym | | ||
| 72274 | Pseudomonadales Orla-Jensen 1921 | | authority | | ||
| 72274 | Pseudomonadales | | scientific name | | ||
| 75 | Caulobacter Henrici and Johnson 1935 (Approved Lists 1980) emend. Abraham et al. 1999 | | authority | | ||
| 75 | Caulobacter | | scientific name | | ||
| 76892 | Caulobacteraceae Henrici and Johnson 1935 | | authority | | ||
| 76892 | Caulobacteraceae | | scientific name | | ||
| 909768 | Acinetobacter calcoaceticus/baumannii complex | | scientific name | | ||
| 91061 | Bacilli Ludwig et al. 2010 | | authority | | ||
| 91061 | Bacilli | | scientific name | | ||
| 91061 | Bacillus/Lactobacillus/Streptococcus group | | synonym | | ||
| 91061 | Firmibacteria Murray 1988 | | authority | | ||
| 91061 | Firmibacteria | | synonym | |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| 1 | 1 | no rank | | 8 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | | | ||
| 1052684 | 1406 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1224 | 2 | phylum | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1236 | 1224 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1239 | 1783272 | phylum | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 131567 | 1 | no rank | | 8 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1385 | 91061 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1406 | 44249 | species | PP | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1783272 | 2 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 186822 | 1385 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 2 | 131567 | superkingdom | | 0 | 0 | 11 | 0 | 0 | 0 | 0 | 0 | | | ||
| 204458 | 28211 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 28211 | 1224 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 366602 | 75 | species | CS | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 44249 | 186822 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 468 | 72274 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 469 | 468 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 470 | 909768 | species | AB | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 696749 | 470 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 72274 | 1236 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 75 | 76892 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 76892 | 204458 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 909768 | 469 | species group | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 91061 | 1239 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | |
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| @@ -0,0 +1,4 @@ | ||
| NC_017543.1/1:366576 366576 1052684 0 | ||
| NC_010333.1/1:177878 177878 366602 1 | ||
| NC_017163.1/1:74451 74451 696749 2 | ||
| NC_017164.1/1:8041 8041 696749 2 |
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| @@ -0,0 +1,4 @@ | ||
| 1052684 0 | ||
| 366602 1 | ||
| 696749 2 | ||
| 696749 2 |
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| import unittest | ||
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| import shlex, filecmp, pickle | ||
|
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| from src.ganon import ganon | ||
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| class TestBuild(unittest.TestCase): | ||
| def test_build(self): | ||
| """ | ||
| Test if build on sample data is working | ||
| """ | ||
| prefix = "test_output" | ||
| ganon.main(shlex.split("ganon build --db-prefix " + prefix + " --taxdump-file tests/ganon/integration/data/mini_nodes.dmp tests/ganon/integration/data/mini_names.dmp --input-files tests/ganon-build/data/sequences/bacteria_NC_010333.1.fasta.gz tests/ganon-build/data/sequences/bacteria_NC_017164.1.fasta.gz tests/ganon-build/data/sequences/bacteria_NC_017163.1.fasta.gz tests/ganon-build/data/sequences/bacteria_NC_017543.1.fasta.gz --taxsbp-path ../taxsbp/")) | ||
|
|
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| for ext in ["bins", "filter", "map"]: | ||
| self.assertTrue(filecmp.cmp(prefix+"."+ext,"tests/ganon/integration/data/sample_bacteria."+ext, shallow=False), "File (" + ext +") is not equal") | ||
|
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| # TODO open pickle .nodes and compare variables | ||
|
|
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| if __name__ == '__main__': | ||
| unittest.main() |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,151 @@ | ||
| 1 | all | | synonym | | ||
| 1 | root | | scientific name | | ||
| 1052684 | Paenibacillus polymyxa M1 | | scientific name | | ||
| 1052684 | Paenibacillus polymyxa strain M1 | | equivalent name | | ||
| 1052684 | Paenibacillus polymyxa str. M1 | | equivalent name | | ||
| 1224 | Alphaproteobacteraeota Oren et al. 2015 | | authority | | ||
| 1224 | Alphaproteobacteraeota | | synonym | | ||
| 1224 | not Proteobacteria Cavalier-Smith 2002 | | authority | | ||
| 1224 | Proteobacteria [class] Stackebrandt et al. 1988 | | authority | | ||
| 1224 | Proteobacteria Garrity et al. 2005 | | authority | | ||
| 1224 | proteobacteria | proteobacteria<blast1224> | blast name | | ||
| 1224 | Proteobacteria | | scientific name | | ||
| 1224 | purple bacteria and relatives | | common name | | ||
| 1224 | purple bacteria | | common name | | ||
| 1224 | purple non-sulfur bacteria | | common name | | ||
| 1224 | purple photosynthetic bacteria and relatives | | common name | | ||
| 1224 | purple photosynthetic bacteria | | common name | | ||
| 1236 | Gammaproteobacteria Garrity et al. 2005 emend. Williams and Kelly 2013 | | authority | | ||
| 1236 | Gammaproteobacteria | | scientific name | | ||
| 1236 | gamma proteobacteria | | synonym | | ||
| 1236 | gamma subdivision | | synonym | | ||
| 1236 | gamma subgroup | | synonym | | ||
| 1236 | g-proteobacteria | | blast name | | ||
| 1236 | Proteobacteria gamma subdivision | | synonym | | ||
| 1236 | Purple bacteria, gamma subdivision | | synonym | | ||
| 1239 | Bacillaeota Oren et al. 2015 | | authority | | ||
| 1239 | Bacillaeota | | synonym | | ||
| 1239 | Bacillus/Clostridium group | | synonym | | ||
| 1239 | clostridial firmicutes | | synonym | | ||
| 1239 | Clostridium group firmicutes | | synonym | | ||
| 1239 | Firmacutes | | synonym | | ||
| 1239 | Firmicutes corrig. Gibbons and Murray 1978 | | authority | | ||
| 1239 | firmicutes | firmicutes <blast1239> | blast name | | ||
| 1239 | Firmicutes | | scientific name | | ||
| 1239 | Gram-positive bacteria | | genbank common name | | ||
| 1239 | Gram positive bacteria | | misspelling | | ||
| 1239 | Low G+C firmicutes | | synonym | | ||
| 1239 | low GC Gram+ | | common name | | ||
| 1239 | low G+C Gram-positive bacteria | | common name | | ||
| 131567 | biota | | synonym | | ||
| 131567 | cellular organisms | | scientific name | | ||
| 1385 | Bacillales Prevot 1953 | | authority | | ||
| 1385 | Bacillales | | scientific name | | ||
| 1385 | Bacillus/Staphylococcus group | | synonym | | ||
| 1406 | "Aerobacillus polymyxa" (Prazmowski 1880) Donker 1926 | | authority | | ||
| 1406 | Aerobacillus polymyxa | | synonym | | ||
| 1406 | ATCC 842 | | type material | | ||
| 1406 | Bacillus polymyxa (Prazmowski 1880) Mace 1889 (Approved Lists 1980) | | authority | | ||
| 1406 | Bacillus polymyxa | | synonym | | ||
| 1406 | Bacillus sp. NCIM 2538 | | includes | | ||
| 1406 | Bacillus sp. NCIM 2540 | | includes | | ||
| 1406 | Bacillus sp. NCIM 2726 | | includes | | ||
| 1406 | Bacillus sp. RP 2.2 | | includes | | ||
| 1406 | CCUG 7426 | | type material | | ||
| 1406 | CFBP 4258 | | type material | | ||
| 1406 | CIP 66.22 | | type material | | ||
| 1406 | "Clostridium polymyxa" Prazmowski 1880 | | authority | | ||
| 1406 | Clostridium polymyxa | | synonym | | ||
| 1406 | DSM 36 | | type material | | ||
| 1406 | "Granulobacter polymyxa" (Prazmowski 1880) Beijerinck 1893 | | authority | | ||
| 1406 | Granulobacter polymyxa | | synonym | | ||
| 1406 | HAMBI 1897 | | type material | | ||
| 1406 | HAMBI 635 | | type material | | ||
| 1406 | IAM 13419 | | type material | | ||
| 1406 | IFO 15309 | | type material | | ||
| 1406 | JCM 2507 | | type material | | ||
| 1406 | LMG 13294 | | type material | | ||
| 1406 | NBRC 15309 | | type material | | ||
| 1406 | NCCB 24016 | | type material | | ||
| 1406 | NCTC 10343 | | type material | | ||
| 1406 | NRRL B-4317 | | type material | | ||
| 1406 | Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994 | | authority | | ||
| 1406 | Paenibacillus polymyxa | | scientific name | | ||
| 1406 | Paenibacillus sp. JCM 8035 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8036 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8037 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8038 | | includes | | ||
| 1406 | Paenibacillus sp. JCM 8039 | | includes | | ||
| 1406 | Paenibacillus sp. WLY78 | | includes | | ||
| 1406 | VKM B-514 | | type material | | ||
| 1783272 | Terrabacteria group | | scientific name | | ||
| 186822 | Paenibacillaceae De Vos et al. 2010 | | authority | | ||
| 186822 | Paenibacillaceae | | scientific name | | ||
| 2 | bacteria | bacteria <blast2> | blast name | | ||
| 2 | Bacteria | Bacteria <prokaryotes> | scientific name | | ||
| 2 | eubacteria | | genbank common name | | ||
| 2 | Monera | Monera <Bacteria> | in-part | | ||
| 2 | not Bacteria Haeckel 1894 | | synonym | | ||
| 2 | Procaryotae | Procaryotae <Bacteria> | in-part | | ||
| 2 | Prokaryotae | Prokaryotae <Bacteria> | in-part | | ||
| 2 | Prokaryota | Prokaryota <Bacteria> | in-part | | ||
| 2 | prokaryote | prokaryote <Bacteria> | in-part | | ||
| 2 | prokaryotes | prokaryotes <Bacteria> | in-part | | ||
| 204458 | Caulobacterales Henrici and Johnson 1935 | | authority | | ||
| 204458 | Caulobacterales | | scientific name | | ||
| 204458 | Caulobacter group | | synonym | | ||
| 28211 | "Alphabacteria" Cavalier-Smith 1992 | | authority | | ||
| 28211 | Alphabacteria Cavalier-Smith 2002 | | authority | | ||
| 28211 | Alphabacteria | | synonym | | ||
| 28211 | Alphaproteobacteria Garrity et al. 2006 | | authority | | ||
| 28211 | Alphaproteobacteria | | scientific name | | ||
| 28211 | alpha proteobacteria | | synonym | | ||
| 28211 | alpha subdivision | | synonym | | ||
| 28211 | alpha subgroup | | synonym | | ||
| 28211 | a-proteobacteria | | blast name | | ||
| 28211 | Proteobacteria alpha subdivision | | synonym | | ||
| 28211 | Purple bacteria, alpha subdivision | | synonym | | ||
| 366602 | Caulobacter sp. K31 | | scientific name | | ||
| 44249 | Bacillus polymyxa group | | synonym | | ||
| 44249 | Paenibacillus Ash et al. 1994 emend. Behrendt et al. 2010 | | authority | | ||
| 44249 | Paenibacillus Ash et al. 1994 emend. Shida et al. 1997 | | authority | | ||
| 44249 | Paenibacillus | | scientific name | | ||
| 44249 | rRNA group 3 bacilli | | synonym | | ||
| 468 | Acinetobacteraceae | | synonym | | ||
| 468 | Branhamaceae | | synonym | | ||
| 468 | Moraxellaceae Rossau et al. 1991 | | authority | | ||
| 468 | Moraxellaceae | | scientific name | | ||
| 469 | Acinetobacter Brisou and Prevot 1954 | | authority | | ||
| 469 | Acinetobacter | | scientific name | | ||
| 470 | Acinetobacter baumanii | | misspelling | | ||
| 470 | Acinetobacter baumannii Bouvet and Grimont 1986 | | authority | | ||
| 470 | Acinetobacter baumannii | | scientific name | | ||
| 470 | Acinetobacter baumanni | | misspelling | | ||
| 470 | Acinetobacter genomosp. 2 | | synonym | | ||
| 470 | Acinetobacter genomospecies 2 | | synonym | | ||
| 470 | ATCC 19606 | | type material | | ||
| 470 | Bacterium anitratum | | synonym | | ||
| 470 | CCUG 19096 | | type material | | ||
| 470 | CIP 70.34 | | type material | | ||
| 470 | DSM 30007 | | type material | | ||
| 470 | JCM 6841 | | type material | | ||
| 470 | LMG 1041 | | type material | | ||
| 470 | NCCB 85021 | | type material | | ||
| 470 | NCTC 12156 | | type material | | ||
| 696749 | Acinetobacter baumannii 1656-2 | | scientific name | | ||
| 696749 | Acinetobacter baumannii str. 1656-2 | | equivalent name | | ||
| 696749 | Acinetobacter baumannii strain 1656-2 | | equivalent name | | ||
| 72274 | gamma-3 proteobacteria | gamma-3 proteobacteria <#4> | in-part | | ||
| 72274 | Pseudomonaceae/Moraxellaceae group | | synonym | | ||
| 72274 | Pseudomonadales Orla-Jensen 1921 | | authority | | ||
| 72274 | Pseudomonadales | | scientific name | | ||
| 75 | Caulobacter Henrici and Johnson 1935 (Approved Lists 1980) emend. Abraham et al. 1999 | | authority | | ||
| 75 | Caulobacter | | scientific name | | ||
| 76892 | Caulobacteraceae Henrici and Johnson 1935 | | authority | | ||
| 76892 | Caulobacteraceae | | scientific name | | ||
| 909768 | Acinetobacter calcoaceticus/baumannii complex | | scientific name | | ||
| 91061 | Bacilli Ludwig et al. 2010 | | authority | | ||
| 91061 | Bacilli | | scientific name | | ||
| 91061 | Bacillus/Lactobacillus/Streptococcus group | | synonym | | ||
| 91061 | Firmibacteria Murray 1988 | | authority | | ||
| 91061 | Firmibacteria | | synonym | |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| 1 | 1 | no rank | | 8 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | | | ||
| 1052684 | 1406 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1224 | 2 | phylum | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1236 | 1224 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1239 | 1783272 | phylum | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 131567 | 1 | no rank | | 8 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1385 | 91061 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 1406 | 44249 | species | PP | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 1783272 | 2 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 186822 | 1385 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 2 | 131567 | superkingdom | | 0 | 0 | 11 | 0 | 0 | 0 | 0 | 0 | | | ||
| 204458 | 28211 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 28211 | 1224 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 366602 | 75 | species | CS | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 44249 | 186822 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 468 | 72274 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 469 | 468 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 470 | 909768 | species | AB | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 696749 | 470 | no rank | | 0 | 1 | 11 | 1 | 0 | 1 | 1 | 0 | | | ||
| 72274 | 1236 | order | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 75 | 76892 | genus | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 76892 | 204458 | family | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 909768 | 469 | species group | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | | ||
| 91061 | 1239 | class | | 0 | 1 | 11 | 1 | 0 | 1 | 0 | 0 | | |
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