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WIP Galaxy tool to relabel samples in a "list-of-pairs" dataset collection #20

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pjbriggs
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PR that attempts to address issue #18. The relabel_samples tool takes a dataset collection (a list of paired FASTQs ) as input along with a list of sample names, and creates a new collection with the same pairs but relabelled using the names from the list.

There are some issues with the initial version:

  • Duplicates the datasets from the input collection unnecessarily (and also eats up disk space/user quota)
  • No sanity checking that number of pairs matches the number of supplied names
  • No way to specify the original name to be relabelled

@pjbriggs pjbriggs force-pushed the relabel-samples-in-dataset-collection branch from 77340d8 to 99c00e6 Compare February 14, 2017 11:17
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See a vastly better implementation of a relabeling tool by @jmchilton via galaxyproject/galaxy#3603

This implements the operation within the Galaxy core and doesn't duplicate the dataset elements from within the source collection when creating the new version.

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Closed, we will use the relabeling tool from the core Galaxy instead.

@pjbriggs pjbriggs deleted the relabel-samples-in-dataset-collection branch February 24, 2017 13:52
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