Added bootstrap gem, haml is now default, created the Welcome controller

Gemfile

@@ -6,13 +6,15 @@ gem 'rails', '3.2.1'
 # gem 'rails', :git => 'git://github.com/rails/rails.git'
 
 gem 'sqlite3'
+gem 'haml-rails'
 
 
 # Gems used only for assets and not required
 # in production environments by default.
 group :assets do
   gem 'sass-rails',   '~> 3.2.3'
   gem 'coffee-rails', '~> 3.2.1'
+  gem 'bootstrap-sass', '2.0.1'
 
   # See https://github.com/sstephenson/execjs#readme for more supported runtimes
   # gem 'therubyracer'

Gemfile.lock

@@ -29,6 +29,7 @@ GEM
       i18n (~> 0.6)
       multi_json (~> 1.0)
     arel (3.0.2)
+    bootstrap-sass (2.0.1)
     builder (3.0.0)
     capybara (1.1.2)
       mime-types (>= 1.16)
@@ -64,6 +65,12 @@ GEM
     ffi (1.0.11)
     gherkin (2.9.0)
       json (>= 1.4.6)
+    haml (3.1.4)
+    haml-rails (0.3.4)
+      actionpack (~> 3.0)
+      activesupport (~> 3.0)
+      haml (~> 3.0)
+      railties (~> 3.0)
     hike (1.2.1)
     i18n (0.6.0)
     journey (1.0.3)
@@ -153,10 +160,12 @@ PLATFORMS
   ruby
 
 DEPENDENCIES
+  bootstrap-sass (= 2.0.1)
   capybara (= 1.1.2)
   coffee-rails (~> 3.2.1)
   cucumber-rails (= 1.3.0)
   database_cleaner (= 0.7.1)
+  haml-rails
   jquery-rails
   rails (= 3.2.1)
   rspec-rails (= 2.8.1)

app/assets/javascripts/welcome.js.coffee

@@ -0,0 +1,3 @@
+# Place all the behaviors and hooks related to the matching controller here.
+# All this logic will automatically be available in application.js.
+# You can use CoffeeScript in this file: http://jashkenas.github.com/coffee-script/

app/assets/stylesheets/application.css.scss

@@ -0,0 +1,8 @@
+/*
+ * This is a manifest file that'll be compiled into application.css, which will include all the files
+ * listed below.
+ *
+*/
+
+@import "bootstrap";
+@import "welcome.css.scss";

app/assets/stylesheets/welcome.css.scss

@@ -0,0 +1,3 @@
+// Place all the styles related to the welcome controller here.
+// They will automatically be included in application.css.
+// You can use Sass (SCSS) here: http://sass-lang.com/

app/controllers/welcome_controller.rb

@@ -0,0 +1,4 @@
+class WelcomeController < ApplicationController
+  def index
+  end
+end

app/helpers/welcome_helper.rb

@@ -0,0 +1,2 @@
+module WelcomeHelper
+end

app/views/layouts/application.html.haml

@@ -0,0 +1,10 @@
+!!! 5
+%html
+  %head
+    %title BioRuby
+    = stylesheet_link_tag    "application", :media => "all"
+    = javascript_include_tag "application"
+    = csrf_meta_tags
+  %body
+    = yield
+

app/views/welcome/index.html.haml

@@ -0,0 +1,2 @@
+%h1 Welcome#index
+%p Find me in app/views/welcome/index.html.haml

config/routes.rb

@@ -1,4 +1,7 @@
 NABiorubyOrg::Application.routes.draw do
+
+  root :to => 'welcome#index'
+
   # The priority is based upon order of creation:
   # first created -> highest priority.
 

spec/controllers/welcome_controller_spec.rb

@@ -0,0 +1,12 @@
+require 'spec_helper'
+
+describe WelcomeController do
+
+  describe "GET 'index'" do
+    it "returns http success" do
+      get 'index'
+      response.should be_success
+    end
+  end
+
+end

spec/helpers/welcome_helper_spec.rb

@@ -0,0 +1,15 @@
+require 'spec_helper'
+
+# Specs in this file have access to a helper object that includes
+# the WelcomeHelper. For example:
+#
+# describe WelcomeHelper do
+#   describe "string concat" do
+#     it "concats two strings with spaces" do
+#       helper.concat_strings("this","that").should == "this that"
+#     end
+#   end
+# end
+describe WelcomeHelper do
+  pending "add some examples to (or delete) #{__FILE__}"
+end