Benchmarking Study of Covariate-Adjusted FDR Methods
This repository includes all code used to perform analyses and generate figures for the manuscript, A practical guide to methods controlling false discoveries in computational biology.
Before attempting to run the code in this repository, please read the following notes.
We do not recommond cloning this entire repository. The repository includes all historical commits and is incredibly large. Instead, we recommend either making a shallow clone of the repository using the following code.
git clone --depth=1 https://github.com/pkimes/benchmark-fdr.git
The code in this repository was run using an older version of the
SummarizedBenchmark package and will not run with newer versions of the package. An older version of the package should be installed from GitHub using the following R code.
devtools::install_github("areyesq89/SummarizedBenchmark", ref = "fdrbenchmark")
Korthauer K†, Kimes PK†, Duvallet C‡, Reyes A‡, Subramanian A‡, Teng M, Shukla C, Alm EJ, Hicks SC*. A practical guide to methods controlling false discoveries in computational biology. bioRxiv. doi: https://doi.org/10.1101/458786
†: co-first authors, ‡: co-second authors, *: corresponding author