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General maintanence of the the code. #124

Merged
merged 94 commits into from
Mar 25, 2018
Merged

General maintanence of the the code. #124

merged 94 commits into from
Mar 25, 2018

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keileg
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@keileg keileg commented Mar 25, 2018

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alessiofumagalli and others added 30 commits March 9, 2018 16:48
@alessiofumagalli
change name of Integral and IntegralMixedDim in the vem module to avo…
5de7590 
…id conflicts with the primal implementation
@alessiofumagalli
update the porepy/__init__.py to expose only the main features
4699f1f
@alessiofumagalli
update the vem solver according to the new porepy import
67dad63
@alessiofumagalli
update two test related to vem to validate the approach
309852e
@keileg
Documentation of Fracture class
2f64c0f
@keileg
Renamed module for test of Fracture class.
cbed57b
@keileg
Removed old function for matplotlib plotting of Fracture and Fracture…
daa8d7c 
…Network.
@keileg
Minor comment to Fracture class
90e7a49
@keileg
New unit tests for Fracture class
95caa4b
@keileg
Commented Intersection class in fractures module.
610290f
@keileg
Removed superfluous functions from FractureNetwork
7e4244a
@keileg
Improved comments for FractureNetwork
11c75f2
@keileg
Removed module for time of flight computation.
69e36bd
Moved error.py up one directory and deleted errors directory
4d03b65
Cleaned print statements in mpfa_conv_test
d92ac9b
@keileg
Bugfix in FractureNetwork.add()
6431a56
@keileg
Merge branch 'cleanup' of https://github.com/pmgbergen/porepy into cl…
0f21069 
…eanup
Error imports fixed
d8df10a
Merge branch 'cleanup' of https://github.com/pmgbergen/porepy into cl…
1b238ff 
…eanup
@keileg
Added grids to top-level init
7c5df38
@keileg
Bugfix in grid.get_internal_faces()
a7ef0cd
@keileg
New unit tests for Grid class
23386a6
@keileg
Added comments to Grid class
6e33c2e
@keileg
Bugfix in FractureNetwork.add()
bb993f2
Renaming of DFN_meshing + new import style there and for Darcy_equation
f925536
Merge branch 'cleanup' of https://github.com/pmgbergen/porepy into cl…
14b0e25 
…eanup
Grid objects from top level to Darcy_equation tutorial
e049aa0
Removed Dictionary.txt
39f391e
Updated check_tutorials.remove_plots to recognize pp.plot_grid
9b97522
Models in init and move of fracture_visualization
8c10c80
Runar and others added 23 commits March 16, 2018 15:31
Started fixing porpey examples
e385d75
Removed wrong return in fractures.py and added warnings import to exp…
1140467 
…orter
Mesh size updates and NthOrderTENSOR in notebooks
4a964c5
Mesh size updates, tests
984940a
@keileg
Unit tests for mcolon.
6719bf6
@keileg
Unit test for grid bounding box
7346339
@keileg
More unit tests for GridBucket
bcc4b18
@keileg
Added time stepper methods to main __init__
e70fec8
@keileg
Updated flow and transport example of arxiv_1712_00460
e0b8e26
@keileg
Modify Gridbukcet to work with networkx 1.x and 2.x
0bdb1d3
@keileg
Update to newest version of meshio.
cdfccac 
Change in how the physcial names are represented in the gmsh .geo file
@keileg
Minor modification to setmembership
5360081
@keileg
Computed bounding box for FractureNetwork extends in all directions.
e9bb129 
Previous version failed when a single fracture was aligned with a
coordinate axis.

Fix of #116.
@keileg
Fix version of scipy and numpy.
78173a7 
There seems to be compatibility issues with scipy 1.0
Merge remote-tracking branch 'origin/cleanup' into cleanup
d074e53
Avoid rounding by ismember_rows
fb123a5
Purged old 2d mesh size in tests
30ac114
Purged old 2d mesh size in examples
4071af3
Updates to special mesh size treatment of boundary points
4375818
Unit test of mesh size determination
317da63
Fixed low_pressure_stimulation notebook
80d4644
@keileg
Version bump
2a215ff
@keileg
Merge branch 'develop' into cleanup
030ca2a
@coveralls
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coveralls commented Mar 25, 2018 •
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Coverage Status

Coverage increased (+3.6%) to 77.631% when pulling 030ca2a on cleanup into fc807e7 on develop.

@keileg keileg merged commit accb039 into develop Mar 25, 2018
This was referenced Mar 25, 2018
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@keileg keileg deleted the cleanup branch March 25, 2018 18:19
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@keileg @coveralls @alessiofumagalli