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low priority, replace bbduk2.sh with bbduk.sh #23

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colinbrislawn opened this issue Oct 30, 2019 · 1 comment
Open

low priority, replace bbduk2.sh with bbduk.sh #23

colinbrislawn opened this issue Oct 30, 2019 · 1 comment

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@colinbrislawn
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According to this thread by the author, bbduk2.sh is being depreciated in favor of just using bbduk.sh.

As of 38.x, the bbduk2.sh script is no longer included in the conda package.
@brwnj
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brwnj commented Nov 1, 2019

Ah, right! When I, or someone else gets around to this, we've already updated this code in atlas at https://github.com/metagenome-atlas/atlas/blob/master/atlas/rules/qc.snakefile#L285.

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@brwnj @colinbrislawn