qc and parameter table and other things

fixup qc model simplified model allow fractional values of generation time
popsim-consortium · May 26, 2022 · 77f9663 · 77f9663
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commit 77f9663
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Showing 6 changed files with 303 additions and 320 deletions.
diff --git a/docs/_ext/speciescatalog.py b/docs/_ext/speciescatalog.py
@@ -428,6 +428,7 @@ def model_image(self, species, model):
         os.makedirs(f"parameter_images/{species.id}/", exist_ok=True)
         img_name = f"parameter_images/{species.id}/{mid}.png"
         plt.savefig(img_name, dpi=150)
+        plt.close()
         section = nodes.image(uri=img_name)
         return section
 

diff --git a/docs/parameter_tables/AnoGam/GabonAg1000G_1A17.csv b/docs/parameter_tables/AnoGam/GabonAg1000G_1A17.csv
@@ -0,0 +1,4 @@
+Population size,"4,069,863","Modern population size"
+Population size,"205,766","Mean coalescence time / 4"
+"Generation time (yrs.)",1/11,"Generation time"
+"Mutation rate (subst/gen)",3.5e-9,"Mutation rate"