Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bump biopython from 1.80 to 1.81 in /requirements/CI #1446

Open
wants to merge 2 commits into
base: main
Choose a base branch
from

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github Feb 27, 2023

Bumps biopython from 1.80 to 1.81.

Changelog

Sourced from biopython's changelog.

12 February 2023: Biopython 1.81

This release of Biopython supports Python 3.7, 3.8, 3.9, 3.10, 3.11. It has also been tested on PyPy3.7 v7.3.5. We intend to drop Python 3.7 support.

The API documentation and the Biopython Tutorial and Cookbook have been updated to better annotate use and application of the Bio.PDB.internal_coords module.

Bio.Phylo now supports Alignment and MultipleSeqAlignment objects as input.

Several improvements and bug fixes to the snapgene parser contributes by Damien Goutte-Gattat.

Many thanks to the Biopython developers and community for making this release possible, especially the following contributors:

Additionally, a number of small bugs and typos have been fixed with additions to the test suite.

  • Adam Vandergriff
  • Damien Goutte-Gattat
  • Michiel de Hoon
  • Peter Cock
  • Joe Greener
  • Robert Miller
Commits

Dependabot compatibility score

You can trigger a rebase of this PR by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
> **Note** > Automatic rebases have been disabled on this pull request as it has been open for over 30 days.

Bumps [biopython](https://github.com/biopython/biopython) from 1.80 to 1.81.
- [Release notes](https://github.com/biopython/biopython/releases)
- [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst)
- [Commits](https://github.com/biopython/biopython/commits)

---
updated-dependencies:
- dependency-name: biopython
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Feb 27, 2023
@codecov
Copy link

codecov bot commented Feb 27, 2023

Codecov Report

Base: 99.85% // Head: 99.85% // No change to project coverage 👍

Coverage data is based on head (919975e) compared to base (e4df77b).
Patch has no changes to coverable lines.

❗ Current head 919975e differs from pull request most recent head 1165e3b. Consider uploading reports for the commit 1165e3b to get more accurate results

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1446   +/-   ##
=======================================
  Coverage   99.85%   99.85%           
=======================================
  Files         117      117           
  Lines        4032     4032           
  Branches      566      566           
=======================================
  Hits         4026     4026           
  Misses          3        3           
  Partials        3        3           

Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here.

☔ View full report at Codecov.
📢 Do you have feedback about the report comment? Let us know in this issue.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

0 participants