Initial script to convert hapmap to zarr #852
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Codecov Report
@@ Coverage Diff @@
## main #852 +/- ##
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Coverage 99.08% 99.08%
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Files 55 55
Lines 2412 2412
Branches 285 285
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Hits 2390 2390
Misses 14 14
Partials 8 8 Continue to review full report at Codecov.
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would we still store hapmap formatted files in AWS or would we push a new directory full of zarrs? |
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Just push a new directory full of zarrs. We'd keep the old maps around forever, so that existing code won't break, but this would be a clean start. |
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A first pass at #851.
Opening the zarr and getting the recombination map now takes a fraction of a second, massively faster than parsing hapmap.