Add Streptococcus agalactiae CC17 strains.

[jeanrjc]

Follow up PR for issue #843.

I discussed in the corresponding issue how I came up with the parametrization.

[codecov]

Codecov Report

Merging #854 (8033d33) into main (e6e1c15) will increase coverage by 0.10%.
The diff coverage is 100.00%.

❗ Current head 8033d33 differs from pull request most recent head aaaaf45. Consider uploading reports for the commit aaaaf45 to get more accurate results

@@            Coverage Diff             @@
##             main     #854      +/-   ##
==========================================
+ Coverage   99.39%   99.50%   +0.10%     
==========================================
  Files          68       58      -10     
  Lines        2474     2407      -67     
  Branches      285      285              
==========================================
- Hits         2459     2395      -64     
+ Misses          7        5       -2     
+ Partials        8        7       -1     

Impacted Files	Coverage Δ
stdpopsim/catalog/StrAga/__init__.py	100.00% <100.00%> (ø)
stdpopsim/catalog/StrAga/genome_data.py	100.00% <100.00%> (ø)
stdpopsim/catalog/StrAga/species.py	100.00% <100.00%> (ø)
stdpopsim/engines.py	100.00% <0.00%> (ø)
stdpopsim/genetic_maps.py	100.00% <0.00%> (ø)
stdpopsim/catalog/BosTau/species.py	100.00% <0.00%> (ø)
stdpopsim/catalog/DroMel/species.py	100.00% <0.00%> (ø)
stdpopsim/catalog/BosTau/demographic_models.py	100.00% <0.00%> (ø)
stdpopsim/catalog/HelMel/genome_data.py
stdpopsim/catalog/HelMel/species.py
... and 15 more

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[jeromekelleher]

Sorry, this the wrong button!

[jeromekelleher]

Looks great to me @jeanrjc! A couple of minor things:

• Looks like your github email isn't in sync (so you won't get contributations attributed to you correctly). See here for more info
• Once you've sorted this out, can you squash the commits down please? (https://stdpopsim.readthedocs.io/en/latest/development.html#rebasing)

thanks for the contribution!

[jeanrjc]

Looks like your github email isn't in sync (so you won't get contributations attributed to you correctly). See here for more info

ah damned, it's an old email address that was hanging around in an old global .gitconfig. Do you know if I can change it in the commit ? Maybe while rebasing ?

[jeromekelleher]

ah damned, it's an old email address that was hanging around in an old global .gitconfig. Do you know if I can change it in the commit ? Maybe while rebasing ?

You can change it with commit --amend I think, or by "edit"ing during the rebase.

[jeromekelleher]

LGTM!