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Pin Hail to the version deployed in CPG's installation (#767)
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* Pin Hail to the version deployed in CPG's installation

Pin this major dependency to avoid ever picking up an incompatible
version. Change grpcio-status pinning to versions that are compatible
with hail 0.2.130, but keep bounds on it to help pip runtime.
We should no longer need anything special for peddy.

* Bump version: 1.24.9 → 1.24.10
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jmarshall committed May 24, 2024
1 parent f760c92 commit 508ef54
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Showing 3 changed files with 6 additions and 6 deletions.
2 changes: 1 addition & 1 deletion .bumpversion.cfg
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
[bumpversion]
current_version = 1.24.9
current_version = 1.24.10
commit = True
tag = False

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2 changes: 1 addition & 1 deletion .github/workflows/docker.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ permissions:
contents: read

env:
VERSION: 1.24.9
VERSION: 1.24.10

jobs:
docker:
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8 changes: 4 additions & 4 deletions setup.py
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Expand Up @@ -5,7 +5,7 @@
setup(
name='cpg-workflows',
# This tag is automatically updated by bumpversion
version='1.24.9',
version='1.24.10',
description='CPG workflows for Hail Batch',
long_description=open('README.md').read(),
long_description_content_type='text/markdown',
Expand All @@ -16,16 +16,16 @@
'cpg-utils>=5.0.4',
'cyvcf2==0.30.18',
'analysis-runner>=2.43.3',
'hail==0.2.126', # Temporarily pin a pre-job-groups Hail version
'hail==0.2.130', # Pin Hail at CPG's installed version
'networkx>=2.8.3',
'obonet>=0.3.1', # for HPO parsing
'grpcio-status>=1.48,<1.50', # Avoid dependency resolution backtracking
'grpcio-status>=1.62', # Avoid dependency resolution backtracking
'onnx',
'onnxruntime',
'skl2onnx',
'metamist>=6.9.0',
'pandas',
'peddy>=0.4.8', # Avoid 0.4.7, which is incompatible
'peddy',
'fsspec',
'slack_sdk',
'elasticsearch==8.*',
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