Skip to content

Codes and data to reproduce the results of research by P. Pernot and collaborators

Notifications You must be signed in to change notification settings

ppernot/Reproducible-Research

Repository files navigation

Reproducible Research

Codes and data to reproduce the results of the following papers:

  • 2024_SimRef "Validation of ML-UQ calibration statistics using simulated reference values: a sensitivity analysis" by P. Pernot (2024) arXiv

  • 2024_RCE "Negative impact of heavy-tailed uncertainty and error distributions on the reliability of calibration statistics for machine learning regression tasks" by P. Pernot (2024) arXiv

  • 2023_BVS "Can bin-wise scaling improve consistency and adaptivity of prediction uncertainty for machine learning regression ?" by P. Pernot (2023) arXiv

  • 2023_Adaptivity "Calibration in Machine Learning Uncertainty Quantification: beyond consistency to target adaptivity" by P. Pernot (2023) APL Mach. Learn. 1:046121; arXiv

  • 2023_isotonic "Stratification of uncertainties recalibrated by isotonic regression and its impact on calibration error statistics" by P. Pernot (2023) arXiv

  • 2023_ENCE "Properties of the ENCE and other MAD-based calibration metrics" by P. Pernot (2023) arXiv

  • 2023_Primer "Validation of uncertainty quantification metrics: a primer based on the consistency and adaptivity concepts" by P. Pernot (2023) arXiv

  • 2022_SampleMean "Comparison of recent estimators of uncertainty on the mean for small measurement samples with normal and non-normal error distributions" by P. Pernot and J.-P. Berthet (2022) arXiv

  • 2022_Confidence "Confidence curves for UQ validation: probabilistic reference vs. oracle" by P. Pernot (2022) arXiv

  • 2022_Tightness "Prediction uncertainty validation for computational chemists" by P. Pernot (2022) J. Chem. Phys. 157:144103; arXiv

  • PU2022 "The long road to calibrated prediction uncertainty in computational chemistry" by P. Pernot (2022) J. Chem. Phys. 156:114109; arXiv

  • Gini "Using the Gini coefficient to characterize the shape of computational chemistry error distributions", by P. Pernot and A. Savin (2021) Theor. Chem. Acc. 140:24; arXiv

  • ML2020 "Impact of non-normal error distributions on the benchmarking and ranking of Quantum Machine Learning models", by P. Pernot, B. Huang and A. Savin (2020) Machine Learning: Science and Technology 1:035011; arXiv

  • SIP "Probabilistic performance estimators for computational chemistry methods: Systematic Improvement Probability and Ranking Probability Matrix. I. Theory", by P. Pernot and A. Savin (2020). J. Chem. Phys. 152:164108; arXiv,
    and
    "Probabilistic performance estimators for computational chemistry methods: Systematic Improvement Probability and Ranking Probability Matrix. II. Applications", by P. Pernot and A. Savin (2020). J. Chem. Phys. 152:164109; arXiv.

  • ECDFT "Probabilistic performance estimators for computational chemistry methods: the empirical cumulative distribution function of absolute errors", by P. Pernot and A. Savin (2018) J. Chem. Phys. 148:241707

  • PUIF "The parameters uncertainty inflation fallacy", by P. Pernot (2017) J. Chem. Phys. 147:104102; arXiv

  • CalPred "A critical review of statistical calibration/prediction models handling data inconsistency and model inadequacy", by P. Pernot and F. Cailliez (2017) AIChE J. 63:4642; arXiv

  • PU_DFA "Prediction Uncertainty of Density Functional Approximations for Properties of Crystals with Cubic Symmetry" by P. Pernot, B. Civalleri, D. Presti and A. Savin (2015) J. Phys. Chem. A 119:5288-5304

  • NegVar "Model's output variance can increase when input variance decreases: a sensitivity analysis paradox?" by P. Pernot, M. Désenfant and F. Hennebelle (2015) 17th International Congress of Metrology, B. Larquier, Ed., EDP Sciences

About

Codes and data to reproduce the results of research by P. Pernot and collaborators

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages