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pratikchandrani/README.md

Hey! I'm Pratik. Welcome to my GitHub profile!


Twitter  Google Scholar  LinkedIn  ORCID  ResearchGate  Website 

Background

Ph.D. in Computational Biology (Cancer Genomics, Functional Genomics, & Bioinformatics) from ACTREC-Tata Memorial Centre, Navi Mumbai.

Main academic interest: Computational Biology, Bioinformatics, Artificial Intelligence, Fundamental Biology

Please find more details here: pratikchandrani.github.io


Research Experience

Genome Sequencing :- Whole Genome Sequencing (WGS) or Targeted Sequencing (whole exome, small panel) based Somatic & Germline Variant Identification, Copy Number Variations, Clonality, and more!

Transcriptome Sequencing :- Gene expression profiling, biological pathways, differential expression, RNAseq variants, gene fusion, small RNA, non-coding RNA, and more!

Human Pathogen Sequencing :- Pathogen Sequencing, Identification, Microbial Community, and more!

Functional Genomics :- SNParray, Pre-Clinical Characterization, RNAi, CRISPR screens, and more!

Structural Bioinformatics :- Mutant Structure Modelling, Molecular Dynamics, Small Molecule Docking, and more!

Population Genomics :- Comparative Genomics, Synteny Analysis, Hardy-Weinberg Equilibrium (HWE), and more!

Wet-lab Science :- Mammalian Cell Culture, Laboratory Animal Experimentation, and more!


Programming Languages

Shell Script  R  Python  Markdown 

Badge Sources: Awesome Badges - https://github.com/Envoy-VC/awesome-badges and custom badges constructed using https://shields.io/
Profile Page Template: Daren Card - https://github.com/darencard

Popular repositories

  1. simple-synthetic-somatic simple-synthetic-somatic Public

    Forked from ljdursi/simple-synthetic-somatic

    Very simple synthetic somatic read/call generator for testing mechanics of pipelines

    Python

  2. academicpages.github.io academicpages.github.io Public

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    Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

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  3. IGV-Batch-Script-Generator-for-bed-files IGV-Batch-Script-Generator-for-bed-files Public

    Forked from julieefeusier/IGV-Batch-Script-Generator-for-bed-files

    These scripts generate IGV batch scripts from bed files. The script can be loaded into IGV for automatic generation of images on the command line.

    Python

  4. IGV-snapshot-automator IGV-snapshot-automator Public

    Forked from stevekm/IGV-snapshot-automator

    Script to automatically create and run IGV snapshot batchscripts

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  5. darencard darencard Public

    Forked from darencard/darencard

    GitHub profile README

  6. pratikchandrani pratikchandrani Public