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Support for Thermo TSQ Altis QQQ #187

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FarmGeek4Life opened this issue Aug 30, 2018 · 3 comments
Closed

Support for Thermo TSQ Altis QQQ #187

FarmGeek4Life opened this issue Aug 30, 2018 · 3 comments

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@FarmGeek4Life
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FarmGeek4Life commented Aug 30, 2018

MSConvert Version (x64): 3.0.18230.1e0a1ad53

Trying to convert a RAW file produced by a Thermo TSQ Altis QQQ I get the error:

[Reader_Thermo::fillInMetadata] unable to parse instrument model; please report this error 
to the ProteoWizard developers with this information: model(TSQ Altis) name(TSQ Altis); if 
want to convert the file anyway, use the ignoreUnknownInstrumentError flag

metadata.txt is the sanitized output from ThermoRawMetaDump.exe. This is SRM data, but in separate processing I have learned that the instrument method is for some reason unreadable by MSFileReader 3.0, but can be read by MSFileReader 3.1 (which is 64-bit only) and also by RawFileReader.

metadata.txt

@chambm
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chambm commented Sep 5, 2018

Added in #204 (but it doesn't have its own CV param yet; it'll show up as just "TSQ", which I thought was at least less misleading than "TSQ Quantum" or some other newer TSQ).

@FarmGeek4Life
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there is the CV term MS:1002874, but that doesn't exist in the pwiz CV enum yet...

@chambm
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chambm commented Sep 6, 2018

Now that's fixed too. Thanks for checking the CV.

@chambm chambm closed this as completed Sep 6, 2018
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