singularity-circos

Singularity recipe for circos.

Installing the container on Bridges 2

Copy the

• SIF file
• and the circos script

to /opt/packages/circos/0.69-9.

Copy the file modulefile.lua to /opt/modulefiles/circos as 0.69-9.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

Copy the data to /ocean

wget http://circos.ca/distribution/circos-current.tgz
mkdir -p /ocean/datasets/community/genomics/circos
tar -xvf circos-current.tgz && rm -f circos-current.tgzmv -v circos-0.69-9/data /ocean/datasets/community/genomics/circos/
rm -rfv circos-0.69-9

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The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.