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Migrated from miniconda to official python bullseye docker image #3901

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Migrated from miniconda to official python bullseye docker image #3901

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08c7a63
migrated to python bullseye
santacodes Mar 18, 2024
7b2b853
Merge branch 'pybamm-team:develop' into docker
santacodes Mar 24, 2024
8f37823
Merge branch 'pybamm-team:develop' into docker
santacodes Mar 27, 2024
31343a1
Merge branch 'pybamm-team:develop' into docker
santacodes Mar 28, 2024
8fc2ea6
added pybamm user to sudoers
santacodes Apr 10, 2024
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58 changes: 16 additions & 42 deletions scripts/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,13 +1,14 @@
FROM continuumio/miniconda3:latest
FROM python:3.11-slim-bullseye

WORKDIR /

# Install the necessary dependencies
RUN apt-get update && apt-get -y upgrade
RUN apt-get install -y libopenblas-dev gcc gfortran graphviz git make g++ build-essential cmake pandoc texlive-latex-extra dvipng
RUN apt-get install -y libopenblas-dev gcc gfortran graphviz git make g++ build-essential cmake pandoc texlive-latex-extra dvipng sudo
RUN rm -rf /var/lib/apt/lists/*

RUN useradd -m -s /bin/bash pybamm
RUN useradd -m -s /bin/bash pybamm && echo "pybamm:pybamm" | chpasswd && adduser pybamm sudo
RUN usermod -ou 1000 -g 0 pybamm
USER pybamm

WORKDIR /home/pybamm/
Expand All @@ -23,47 +24,20 @@ ENV CMAKE_MAKE_PROGRAM=/usr/bin/make
ENV SUNDIALS_INST=/home/pybamm/.local
ENV LD_LIBRARY_PATH=/home/pybamm/.local/lib

RUN conda create -n pybamm python=3.11
RUN conda init --all
SHELL ["conda", "run", "-n", "pybamm", "/bin/bash", "-c"]
RUN conda install -y pip
# Migrating to venv and create a virtual environment for python 3.11
ENV VIRTUAL_ENV=/home/pybamm/venv
RUN python3.11 -m venv $VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"

ARG IDAKLU
ARG ODES
ARG JAX
ARG ALL
RUN pip install --upgrade setuptools wheel wget && \
pip install cmake
RUN #!/bin/bash && \
source /home/pybamm/venv/bin/activate;

RUN pip install --upgrade --user pip setuptools wheel wget
RUN pip install cmake
RUN python scripts/install_KLU_Sundials.py && \
rm -rf pybind11 && \
git clone https://github.com/pybind/pybind11.git && \
pip install -e ".[all,dev,docs,jax,odes]";

RUN if [ "$IDAKLU" = "true" ]; then \
python scripts/install_KLU_Sundials.py && \
rm -rf pybind11 && \
git clone https://github.com/pybind/pybind11.git && \
pip install --user -e ".[all,dev,docs]"; \
fi

RUN if [ "$ODES" = "true" ]; then \
python scripts/install_KLU_Sundials.py && \
pip install --user -e ".[all,dev,docs,odes]"; \
fi

RUN if [ "$JAX" = "true" ]; then \
pip install --user -e ".[all,dev,docs,jax]"; \
fi

RUN if [ "$ALL" = "true" ]; then \
python scripts/install_KLU_Sundials.py && \
rm -rf pybind11 && \
git clone https://github.com/pybind/pybind11.git && \
pip install --user -e ".[all,dev,docs,jax,odes]"; \
fi

RUN if [ -z "$IDAKLU" ] \
&& [ -z "$ODES" ] \
&& [ -z "$JAX" ] \
&& [ -z "$ALL" ]; then \
pip install --user -e ".[all,dev,docs]"; \
fi

ENTRYPOINT ["/bin/bash"]