Optimize writes to existing Zarr stores. #11940
Workflow file for this run
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name: CI Additional | |
on: | |
push: | |
branches: | |
- "main" | |
pull_request: | |
branches: | |
- "main" | |
workflow_dispatch: # allows you to trigger manually | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
detect-ci-trigger: | |
name: detect ci trigger | |
runs-on: ubuntu-latest | |
if: | | |
github.repository == 'pydata/xarray' | |
&& (github.event_name == 'push' || github.event_name == 'pull_request') | |
outputs: | |
triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 2 | |
- uses: xarray-contrib/ci-trigger@v1 | |
id: detect-trigger | |
with: | |
keyword: "[skip-ci]" | |
doctest: | |
name: Doctests | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_ENV_FILE: ci/requirements/environment.yml | |
PYTHON_VERSION: "3.11" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{env.CONDA_ENV_FILE}} | |
environment-name: xarray-tests | |
create-args: >- | |
python=${{env.PYTHON_VERSION}} | |
conda | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Run doctests | |
run: | | |
# Raise an error if there are warnings in the doctests, with `-Werror`. | |
# This is a trial; if it presents an problem, feel free to remove. | |
# See https://github.com/pydata/xarray/issues/7164 for more info. | |
# | |
# If dependencies emit warnings we can't do anything about, add ignores to | |
# `xarray/tests/__init__.py`. | |
# [MHS, 01/25/2024] Skip datatree_ documentation remove after #8572 | |
python -m pytest --doctest-modules xarray --ignore xarray/tests --ignore xarray/datatree_ -Werror | |
mypy: | |
name: Mypy | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_ENV_FILE: ci/requirements/environment.yml | |
PYTHON_VERSION: "3.11" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{env.CONDA_ENV_FILE}} | |
environment-name: xarray-tests | |
create-args: >- | |
python=${{env.PYTHON_VERSION}} | |
conda | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Install mypy | |
run: | | |
python -m pip install "mypy<1.9" --force-reinstall | |
- name: Run mypy | |
run: | | |
python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report xarray/ | |
- name: Upload mypy coverage to Codecov | |
uses: codecov/codecov-action@v4.1.0 | |
with: | |
file: mypy_report/cobertura.xml | |
flags: mypy | |
env_vars: PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false | |
mypy39: | |
name: Mypy 3.9 | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_ENV_FILE: ci/requirements/environment.yml | |
PYTHON_VERSION: "3.9" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{env.CONDA_ENV_FILE}} | |
environment-name: xarray-tests | |
create-args: >- | |
python=${{env.PYTHON_VERSION}} | |
conda | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Install mypy | |
run: | | |
python -m pip install "mypy<1.9" --force-reinstall | |
- name: Run mypy | |
run: | | |
python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report xarray/ | |
- name: Upload mypy coverage to Codecov | |
uses: codecov/codecov-action@v4.1.0 | |
with: | |
file: mypy_report/cobertura.xml | |
flags: mypy39 | |
env_vars: PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false | |
pyright: | |
name: Pyright | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
if: | | |
always() | |
&& ( | |
contains( github.event.pull_request.labels.*.name, 'run-pyright') | |
) | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_ENV_FILE: ci/requirements/environment.yml | |
PYTHON_VERSION: "3.10" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{env.CONDA_ENV_FILE}} | |
environment-name: xarray-tests | |
create-args: >- | |
python=${{env.PYTHON_VERSION}} | |
conda | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Install pyright | |
run: | | |
python -m pip install pyright --force-reinstall | |
- name: Run pyright | |
run: | | |
python -m pyright xarray/ | |
- name: Upload pyright coverage to Codecov | |
uses: codecov/codecov-action@v4.1.0 | |
with: | |
file: pyright_report/cobertura.xml | |
flags: pyright | |
env_vars: PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false | |
pyright39: | |
name: Pyright 3.9 | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
if: | | |
always() | |
&& ( | |
contains( github.event.pull_request.labels.*.name, 'run-pyright') | |
) | |
defaults: | |
run: | |
shell: bash -l {0} | |
env: | |
CONDA_ENV_FILE: ci/requirements/environment.yml | |
PYTHON_VERSION: "3.9" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{env.CONDA_ENV_FILE}} | |
environment-name: xarray-tests | |
create-args: >- | |
python=${{env.PYTHON_VERSION}} | |
conda | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Install pyright | |
run: | | |
python -m pip install pyright --force-reinstall | |
- name: Run pyright | |
run: | | |
python -m pyright xarray/ | |
- name: Upload pyright coverage to Codecov | |
uses: codecov/codecov-action@v4.1.0 | |
with: | |
file: pyright_report/cobertura.xml | |
flags: pyright39 | |
env_vars: PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false | |
min-version-policy: | |
name: Minimum Version Policy | |
runs-on: "ubuntu-latest" | |
needs: detect-ci-trigger | |
if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-name: xarray-tests | |
create-args: >- | |
python=3.11 | |
pyyaml | |
conda | |
python-dateutil | |
- name: All-deps minimum versions policy | |
run: | | |
python ci/min_deps_check.py ci/requirements/min-all-deps.yml | |
- name: Bare minimum versions policy | |
run: | | |
python ci/min_deps_check.py ci/requirements/bare-minimum.yml |