Add hook for patoolib #469

Workflow file for this run

.github/workflows/pr-test.yml at f35c480

	name: Pull Request CI

	# Controls when the action will run. Triggers the workflow on push or pull request
	# events but only for the master branch
	on:
	workflow_dispatch:
	pull_request:
	paths:
	- requirements-test-libraries.txt

	env:
	# Colored pytest output on CI despite not having a tty
	FORCE_COLOR: 1

	permissions:
	contents: read # to fetch code (actions/checkout)

	jobs:
	test:
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	python-version: [3.8, 3.9, '3.10', '3.11']
	pyinstaller: ["https://github.com/pyinstaller/pyinstaller/archive/develop.zip"]
	os: ["macos-12", "ubuntu-22.04", "windows-latest"]
	fail-fast: false

	env:
	# Rebuild bootloader when installing PyInstaller from develop branch
	PYINSTALLER_COMPILE_BOOTLOADER: 1

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Limit dependencies to only new/changed libraries.
	if: "${{ github.event.pull_request }}"
	shell: bash
	run: \|
	git fetch origin ${{ github.base_ref }}
	set +e
	# NOTE: we need to be compatible with both GNU diff and Apple/FreeBSD diff
	diff \
	<(git show origin/${{ github.base_ref }}:requirements-test-libraries.txt) \
	<(git show HEAD:requirements-test-libraries.txt) \
	\| grep -E "^>" \| sed "s/^> //" \
	> requirements-test-libraries.txt
	set -e
	echo '-r requirements-test.txt' >> requirements-test-libraries.txt
	if grep -q pyqtgraph requirements-test-libraries.txt ; then echo PyQt5 >> requirements-test-libraries.txt ;fi
	# NOTE: specify minimum allowed version for sudachidict-* packages, to prevent pip from installing invalid
	# SudachiDict_full-0.0.0-py3-none-any.whl due to --prefer-binary switch used with pip install...
	if grep -q sudachipy requirements-test-libraries.txt; then
	echo "sudachidict-small>=20230927" >> requirements-test-libraries.txt;
	echo "sudachidict-core>=20230927" >> requirements-test-libraries.txt;
	echo "sudachidict-full>=20230927" >> requirements-test-libraries.txt;
	fi
	# pythainlp requires python-crfsuite, but fails to declare it as a requirement.
	if grep -q pythainlp requirements-test-libraries.txt ; then echo python-crfsuite >> requirements-test-libraries.txt; fi
	cat requirements-test-libraries.txt

	- name: Set up .NET Core for pythonnet tests
	uses: actions/setup-dotnet@v4
	with:
	dotnet-version: '6.x'

	# Install MariaDB Connector/C from official MariaDB Community Server
	# repository. The version shipped with ubuntu-20.04 is too old for
	# the "mariadb" python package.
	- name: Install MariaDB Connector/C
	if: startsWith(matrix.os, 'ubuntu')
	run: \|
	sudo apt-get update
	sudo apt-get install -y wget apt-transport-https
	wget https://downloads.mariadb.com/MariaDB/mariadb_repo_setup
	echo "30d2a05509d1c129dd7dd8430507e6a7729a4854ea10c9dcf6be88964f3fdc25 mariadb_repo_setup" \| sha256sum -c -
	chmod +x mariadb_repo_setup
	sudo ./mariadb_repo_setup
	sudo apt-get install -y libmariadb3 libmariadb-dev

	- name: Install apt dependencies
	if: startsWith(matrix.os, 'ubuntu')
	run: \|
	sudo apt-get update
	# Set up a virtual screen (for GUI libraries and pynput).
	sudo apt-get install libxcb-xkb-dev xvfb
	Xvfb :99 & echo "DISPLAY=:99" >> $GITHUB_ENV
	# Install PyQt5 (qtmodern) dependencies.
	sudo apt-get install -y libxcb-image0 libxcb-keysyms1 libxcb-render-util0 \
	libxkbcommon-x11-0 libxcb-icccm4 libxcb1 openssl \
	libxcb-randr0-dev libxcb-xtest0-dev libxcb-xinerama0-dev \
	libxcb-shape0-dev libxcb-xkb-dev libopengl0 libegl1 \
	libpulse0 libpulse-mainloop-glib0
	# Install cairo dependencies.
	sudo apt-get install -y libcairo2
	# Install libdiscid (dependency of discid python package).
	sudo apt-get install -y libdiscid0
	# These are dependencies of gmsh
	sudo apt-get install -y libglu1 libgl1 libxrender1 libxcursor1 libxft2 \
	libxinerama1 libgomp1
	# This one is required by eccodes
	sudo apt-get install -y libeccodes0

	- name: Install brew dependencies
	if: startsWith(matrix.os, 'macos')
	run: \|
	# Install cairo dependencies.
	brew install cairo
	# Install pango dependencies (weasyprint hook).
	brew install pango
	# Install libdiscid (dependency of discid python package).
	brew install libdiscid
	# Install lsl library for pylsl
	brew install labstreaminglayer/tap/lsl
	# This one is required by eccodes
	brew install eccodes

	- name: Install dependencies
	shell: bash
	run: \|
	# Upgrade to the latest pip.
	python -m pip install -U pip setuptools wheel

	# Install hooks-contrib
	pip install -e .
	pip install --prefer-binary -r requirements-test-libraries.txt

	# Install PyInstaller
	pip install ${{ matrix.pyinstaller }}

	- name: Run tests
	run: pytest -v

	# Conditionally enable slow tests, so that they are ran only if
	# their corresponding packages are explicitly installed but not
	# if they are installed as dependencies of some other package.
	- name: Check if slow tests are required (scikit-learn)
	id: check-scikit-learn
	shell: bash
	run: \|
	grep -E "scikit-learn" requirements-test-libraries.txt && echo "AVAILABLE=yes" >> $GITHUB_OUTPUT \|\| echo "AVAILABLE=no" >> $GITHUB_OUTPUT

	- name: Run slow tests (scikit-learn)
	if: ${{ steps.check-scikit-learn.outputs.AVAILABLE == 'yes' }}
	run: pytest -v -m slow -k sklearn

	- name: Check if slow tests are required (scikit-image)
	id: check-scikit-image
	shell: bash
	run: \|
	grep -E "scikit-image" requirements-test-libraries.txt && echo "AVAILABLE=yes" >> $GITHUB_OUTPUT \|\| echo "AVAILABLE=no" >> $GITHUB_OUTPUT

	- name: Run slow tests (scikit-image)
	if: ${{ steps.check-scikit-image.outputs.AVAILABLE == 'yes' }}
	run: pytest -v -m slow -k skimage

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Add hook for patoolib #469

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Add hook for patoolib #469

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Workflow file for this run