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Fix conda bug - not resolving environment #1456

Merged
merged 5 commits into from Jan 18, 2023
Merged

Fix conda bug - not resolving environment #1456

merged 5 commits into from Jan 18, 2023

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jan-janssen
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File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/structure/factories/materialsproject.py:2
[2404](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2405)
      1 from typing import Union, List
[2405](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2406)
----> 2 from mp_api.client import MPRester
[2406](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2407)
      3 from pyiron_atomistics.atomistics.structure.has_structure import HasStructure
[2407](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2408)
      4 from pyiron_atomistics.atomistics.structure.structurestorage import StructureStorage
[2408](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2409)

[2409](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2410)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/mp_api/client/__init__.py:13
[2410](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2411)
     11 except (ImportError, LookupError):  # pragma: no cover
[2411](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2412)
     12     try:
[2412](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2413)
---> 13         __version__ = get_distribution(__package__).version
[2413](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2414)
     14     except DistributionNotFound:  # pragma: no cover
[2414](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2415)
     15         __version__ = os.environ.get("SETUPTOOLS_SCM_PRETEND_VERSION", None)
[2415](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2416)

[2416](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2417)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:514, in get_distribution(dist)
[2417](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2418)
    512     dist = Requirement.parse(dist)
[2418](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2419)
    513 if isinstance(dist, Requirement):
[2419](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2420)
--> 514     dist = get_provider(dist)
[2420](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2421)
    515 if not isinstance(dist, Distribution):
[2421](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2422)
    516     raise TypeError("Expected string, Requirement, or Distribution", dist)
[2422](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2423)

[2423](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2424)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:386, in get_provider(moduleOrReq)
[2424](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2425)
    384 """Return an IResourceProvider for the named module or requirement"""
[2425](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2426)
    385 if isinstance(moduleOrReq, Requirement):
[2426](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2427)
--> 386     return working_set.find(moduleOrReq) or require(str(moduleOrReq))[0]
[2427](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2428)
    387 try:
[2428](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2429)
    388     module = sys.modules[moduleOrReq]
[2429](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2430)

[2430](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2431)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:956, in WorkingSet.require(self, *requirements)
[2431](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2432)
    947 def require(self, *requirements):
[2432](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2433)
    948     """Ensure that distributions matching `requirements` are activated
[2433](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2434)
    949 
[2434](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2435)
    950     `requirements` must be a string or a (possibly-nested) sequence
[2435](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2436)
   (...)
[2436](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2437)
    954     included, even if they were already activated in this working set.
[2437](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2438)
    955     """
[2438](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2439)
--> 956     needed = self.resolve(parse_requirements(requirements))
[2439](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2440)
    958     for dist in needed:
[2440](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2441)
    959         self.add(dist)
[2441](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2442)

[2442](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2443)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:815, in WorkingSet.resolve(self, requirements, env, installer, replace_conflicting, extras)
[2443](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2444)
    812 if not req_extras.markers_pass(req, extras):
[2444](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2445)
    813     continue
[2445](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2446)
--> 815 dist = self._resolve_dist(
[2446](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2447)
    816     req, best, replace_conflicting, env, installer, required_by, to_activate
[2447](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2448)
    817 )
[2448](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2449)
    819 # push the new requirements onto the stack
[2449](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2450)
    820 new_requirements = dist.requires(req.extras)[::-1]
[2450](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2451)

[2451](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2452)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:844, in WorkingSet._resolve_dist(self, req, best, replace_conflicting, env, installer, required_by, to_activate)
[2452](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2453)
    842 if env is None:
[2453](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2454)
    843     if dist is None:
[2454](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2455)
--> 844         env = Environment(self.entries)
[2455](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2456)
    845     else:
[2456](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2457)
    846         # Use an empty environment and workingset to avoid
[2457](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2458)
    847         # any further conflicts with the conflicting
[2458](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2459)
    848         # distribution
[2459](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2460)
    849         env = Environment([])
[2460](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2461)

[2461](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2462)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:1044, in Environment.__init__(self, search_path, platform, python)
[2462](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2463)
   1042 self.platform = platform
[2463](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2464)
   1043 self.python = python
[2464](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2465)
-> 1044 self.scan(search_path)
[2465](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2466)

[2466](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2467)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:1077, in Environment.scan(self, search_path)
[2467](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2468)
   1075 for item in search_path:
[2468](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2469)
   1076     for dist in find_distributions(item):
[2469](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2470)
-> 1077         self.add(dist)
[2470](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2471)

[2471](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2472)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:1096, in Environment.add(self, dist)
[2472](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2473)
   1094 if dist not in dists:
[2473](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2474)
   1095     dists.append(dist)
[2474](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2475)
-> 1096     dists.sort(key=operator.attrgetter('hashcmp'), reverse=True)
[2475](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2476)

[2476](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2477)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:2631, in Distribution.hashcmp(self)
[2477](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2478)
   2628 @property
[2478](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2479)
   2629 def hashcmp(self):
[2479](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2480)
   2630     return (
[2480](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2481)
-> 2631         self.parsed_version,
[2481](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2482)
   2632         self.precedence,
[2482](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2483)
   2633         self.key,
[2483](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2484)
   2634         self.location,
[2484](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2485)
   2635         self.py_version or '',
[2485](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2486)
   2636         self.platform or '',
[2486](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2487)
   2637     )
[2487](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2488)

[2488](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2489)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/__init__.py:2678, in Distribution.parsed_version(self)
[2489](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2490)
   2675 @property
[2490](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2491)
   2676 def parsed_version(self):
[2491](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2492)
   2677     if not hasattr(self, "_parsed_version"):
[2492](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2493)
-> 2678         self._parsed_version = parse_version(self.version)
[2493](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2494)
   2680     return self._parsed_version
[2494](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2495)

[2495](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2496)
File /usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pkg_resources/_vendor/packaging/version.py:266, in Version.__init__(self, version)
[2496](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2497)
    264 match = self._regex.search(version)
[2497](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2498)
    265 if not match:
[2498](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2499)
--> 266     raise InvalidVersion(f"Invalid version: '{version}'")
[2499](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2500)
    268 # Store the parsed out pieces of the version
[2500](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2501)
    269 self._version = _Version(
[2501](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2502)
    270     epoch=int(match.group("epoch")) if match.group("epoch") else 0,
[2502](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2503)
    271     release=tuple(int(i) for i in match.group("release").split(".")),
[2503](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2504)
   (...)
[2504](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2505)
    277     local=_parse_local_version(match.group("local")),
[2505](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2506)
    278 )
[2506](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2507)

[2507](https://github.com/pyiron/pyiron/actions/runs/3944340592/jobs/6750130091#step:6:2508)
InvalidVersion: Invalid version: 'NOT-A-GIT-REPOSITORY'

The issue seems to be related to the mp_api package from mp_api.client import MPRester

@jan-janssen jan-janssen mentioned this pull request Jan 18, 2023
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@pmrv pmrv mentioned this pull request Jan 18, 2023
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pmrv commented Jan 18, 2023

I've made an issue with mp-api folks, in the mean time we can try to downgrade setuptools on the cluster.

@jan-janssen jan-janssen reopened this Jan 18, 2023
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I've made an issue with mp-api folks, in the mean time we can try to downgrade setuptools on the cluster.

Downgrading setuptools works but it is kind of ugly.

@jan-janssen jan-janssen merged commit 82b7593 into main Jan 18, 2023
@delete-merged-branch delete-merged-branch bot deleted the conda_bug branch January 18, 2023 23:12
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