Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We鈥檒l occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Switch to setup-micromamba action #7213

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Switch to setup-micromamba action #7213

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
44 changes: 9 additions & 35 deletions .github/workflows/pre-commit.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,9 @@ on:
push:
branches: [main]

defaults:
run:
shell: bash -leo pipefail {0}
jobs:
pre-commit:
runs-on: ubuntu-latest
Expand All @@ -18,50 +21,21 @@ jobs:
- uses: pre-commit/action@v3.0.1
mypy:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if environment-test.yml has not changed
CACHE_NUMBER: 0
- uses: mamba-org/setup-micromamba@v1
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py39-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/environment-test.yml
python-version: "3.10" # Run pre-commit on oldest supported Python version
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=3.10
environment-name: pymc-test
init-shell: bash
cache-environment: true
- name: Install-pymc and mypy dependencies
run: |
conda activate pymc-test
pip install -e .
pip install --pre -U polyagamma
python --version
- name: Run mypy
run: |
conda activate pymc-test
python ./scripts/run_mypy.py --verbose
198 changes: 35 additions & 163 deletions .github/workflows/tests.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -128,50 +128,24 @@ jobs:
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native'
defaults:
run:
shell: bash -l {0}
shell: bash -leo pipefail {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if environment-test.yml has not changed
CACHE_NUMBER: 0
- uses: mamba-org/setup-micromamba@v1
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=${{matrix.python-version}}
environment-name: pymc-test
init-shell: bash
cache-environment: true
- name: Install-pymc
run: |
conda activate pymc-test
pip install -e .
pip install --pre -U polyagamma
python --version
- name: Run tests
run: |
conda activate pymc-test
python -m pytest -vv --cov=pymc --cov-report=xml --no-cov-on-fail --cov-report term --durations=50 $TEST_SUBSET
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
Expand Down Expand Up @@ -202,52 +176,26 @@ jobs:
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=core2'
defaults:
run:
shell: cmd
shell: cmd /C call {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if conda-envs/windows-environment-test.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/windows-environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
- uses: mamba-org/setup-micromamba@v1
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/windows-environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=${{matrix.python-version}}
environment-name: pymc-test
init-shell: cmd.exe
cache-environment: true
- name: Install-pymc
run: |
conda activate pymc-test
pip install -e .
pip install --pre -U polyagamma
python --version
- name: Run tests
# This job uses a cmd shell, therefore the environment variable syntax is different!
# The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682).
run: >-
conda activate pymc-test &&
python -m pytest -vv --cov=pymc --cov-report=xml --no-cov-on-fail --cov-report term --durations=50 %TEST_SUBSET%
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
Expand Down Expand Up @@ -285,44 +233,19 @@ jobs:
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native'
defaults:
run:
shell: bash -l {0}
shell: bash -leo pipefail {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if environment-test.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
- uses: mamba-org/setup-micromamba@v1
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=${{matrix.python-version}}
environment-name: pymc-test
init-shell: bash
cache-environment: true
- name: Install pymc
run: |
conda activate pymc-test
pip install -e .
python --version
- name: Run tests
Expand Down Expand Up @@ -353,44 +276,19 @@ jobs:
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native'
defaults:
run:
shell: bash -l {0}
shell: bash -leo pipefail {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if environment-jax.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/environment-jax.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
- uses: mamba-org/setup-micromamba@v1
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/environment-jax.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=${{matrix.python-version}}
environment-name: pymc-test
init-shell: bash
cache-environment: true
- name: Install pymc
run: |
conda activate pymc-test
pip install -e .
python --version
- name: Run tests
Expand Down Expand Up @@ -421,52 +319,26 @@ jobs:
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=core2'
defaults:
run:
shell: cmd
shell: cmd /C call {0}
steps:
- uses: actions/checkout@9bb56186c3b09b4f86b1c65136769dd318469633
- name: Cache conda
uses: actions/cache@v4
env:
# Increase this value to reset cache if conda-envs/windows-environment-test.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/windows-environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v4
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{ env.CACHE_NUMBER }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
- uses: mamba-org/setup-micromamba@v1
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-test
channel-priority: strict
environment-file: conda-envs/windows-environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: false # IMPORTANT: This may break caching of conda packages! See https://github.com/conda-incubator/setup-miniconda/issues/267
create-args: >-
python=${{matrix.python-version}}
environment-name: pymc-test
init-shell: cmd.exe
cache-environment: true
- name: Install-pymc
run: |
conda activate pymc-test
pip install -e .
pip install --pre -U polyagamma
python --version
- name: Run tests
# This job uses a cmd shell, therefore the environment variable syntax is different!
# The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682).
run: >-
conda activate pymc-test &&
python -m pytest -vv --cov=pymc --cov-report=xml --no-cov-on-fail --cov-report term --durations=50 %TEST_SUBSET%
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v4
Expand Down