Merge pull request #2522 from pymc-devs/notebook_edits

Minor improvements to 3 notebooks
pymc-devs · Aug 23, 2017 · 46714e3 · 46714e3
2 parents 1f34a5f + d364ab0
commit 46714e3
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Showing 4 changed files with 223 additions and 373 deletions.
diff --git a/docs/source/notebooks/Diagnosing_biased_Inference_with_Divergences.ipynb b/docs/source/notebooks/Diagnosing_biased_Inference_with_Divergences.ipynb
diff --git a/docs/source/notebooks/convolutional_vae_keras_advi.ipynb b/docs/source/notebooks/convolutional_vae_keras_advi.ipynb
diff --git a/docs/source/notebooks/probabilistic_matrix_factorization.ipynb b/docs/source/notebooks/probabilistic_matrix_factorization.ipynb
@@ -52,9 +52,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -252,9 +250,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -287,9 +283,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -325,9 +319,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -366,9 +358,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -428,9 +418,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -509,9 +497,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "from collections import OrderedDict\n",
@@ -635,9 +621,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "import time\n",
@@ -723,9 +707,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "try:\n",
@@ -820,9 +802,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# Draw MCMC samples.\n",
@@ -870,9 +850,7 @@
   {
    "cell_type": "code",
    "execution_count": 11,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def _predict(self, U, V):\n",
@@ -922,9 +900,7 @@
   {
    "cell_type": "code",
    "execution_count": 12,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "# Define our evaluation function.\n",
@@ -951,9 +927,7 @@
   {
    "cell_type": "code",
    "execution_count": 13,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "import hashlib\n",
@@ -1018,9 +992,7 @@
   {
    "cell_type": "code",
    "execution_count": 14,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "train, test = load_train_test('6bb8d06c69c0666e6da14c094d4320d115f1ffc8')"
@@ -1036,9 +1008,7 @@
   {
    "cell_type": "code",
    "execution_count": 15,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -1070,9 +1040,7 @@
   {
    "cell_type": "code",
    "execution_count": 16,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stderr",
@@ -1113,9 +1081,7 @@
   {
    "cell_type": "code",
    "execution_count": 17,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stderr",
@@ -1158,9 +1124,7 @@
   {
    "cell_type": "code",
    "execution_count": 18,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def eval_map(pmf_model, train, test):\n",
@@ -1188,9 +1152,7 @@
   {
    "cell_type": "code",
    "execution_count": 19,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -1228,7 +1190,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": false,
     "scrolled": true
    },
    "outputs": [],
@@ -1254,9 +1215,7 @@
   {
    "cell_type": "code",
    "execution_count": 21,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def _norms(pmf_model, monitor=('U', 'V'), ord='fro'):\n",
@@ -1293,9 +1252,7 @@
   {
    "cell_type": "code",
    "execution_count": 22,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -1322,9 +1279,7 @@
   {
    "cell_type": "code",
    "execution_count": 23,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def _running_rmse(pmf_model, test_data, train_data, burn_in=0, plot=True):\n",
@@ -1360,9 +1315,7 @@
   {
    "cell_type": "code",
    "execution_count": 24,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -1382,9 +1335,7 @@
   {
    "cell_type": "code",
    "execution_count": 25,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "name": "stdout",
@@ -1428,9 +1379,7 @@
   {
    "cell_type": "code",
    "execution_count": 26,
-   "metadata": {
-    "collapsed": false
-   },
+   "metadata": {},
    "outputs": [
     {
      "data": {
@@ -1500,21 +1449,12 @@
     "\n",
     "\n"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python [default]",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -1528,7 +1468,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.2"
+   "version": "3.6.1"
   }
  },
  "nbformat": 4,

diff --git a/docs/source/notebooks/sgfs_simple_optimization.ipynb b/docs/source/notebooks/sgfs_simple_optimization.ipynb
@@ -199,7 +199,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.2"
+   "version": "3.6.1"
   },
   "toc": {
    "colors": {