Release v0.28.0 · pymedphys/pymedphys

This release primarily focused on changes regarding the iCOM listener and the
PyMedPhys GUI that utilises these iCOM records.

Removed the pymedphys icom archive CLI command, this archiving is now built
directly into the listener itself.

The pymedphys icom listener CLI command now will collect the icom stream
into beam delivery batches and index them by patient name. This functionality
used to be undergone within the pymedphys icom archive CLI, but this
functionality has now been merged into the listener. listener.py#L79
Should an error occur within pymedphys icom listener CLI it will now pause
for 15 minutes and then reattempt a connection.
Add in extra sanity checks within the iCOM patient indexing tooling.
Added a --debug and --verbose flag to the PyMedPhys CLI which allows
users to set the logging level. These logging levels are currently only
utilised within the pymedphys icom listen CLI. cli/main.py#L51-L70

Reduced the buffer size of the iCOM listener. listener.py#L9
If either the listener is turned off and then on again, or it is interrupted
the next time an iCOM stream socket is opened the Linac appears to send a
larger batch containing prior irradiations. The listener code was adjusted
to handle these extra bursts. listener.py#L57-L83
Made PyMedPhys GUI skip name formatting attempt if the original patient name
format was not as expected. mudensity-compare.py#L733-L738

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