Redesign Build System for PyNE with Scikit-Build #24
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name: Quick Wheel test | |
on: | |
# allows running workflows manually | |
workflow_dispatch: | |
pull_request: | |
branches: | |
- develop | |
paths-ignore: | |
- docs/** | |
push: | |
branches: | |
- develop | |
paths-ignore: | |
- docs/** | |
jobs: | |
main: | |
strategy: | |
matrix: | |
os: [ubuntu-latest, windows-latest] | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.x | |
- name: Install hdf5 Ubuntu | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y gfortran libblas-dev liblapack-dev libeigen3-dev libhdf5-dev hdf5-tools | |
# hdf5 std directory | |
hdf5_libdir=/usr/lib/x86_64-linux-gnu/hdf5/serial | |
# need to put libhdf5.so on LD_LIBRARY_PATH | |
if [ -z $LD_LIBRARY_PATH ]; then | |
export LD_LIBRARY_PATH="${hdf5_libdir}:$GITHUB_WORKSPACE/lib" | |
else | |
export LD_LIBRARY_PATH="${hdf5_libdir}:$GITHUB_WORKSPACE/lib:$LD_LIBRARY_PATH" | |
fi | |
if: matrix.os == 'ubuntu-latest' | |
- name: Install Miniconda Windows | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-activate-base: true | |
activate-environment: "" | |
if: matrix.os == 'windows-latest' | |
- name: Install hdf5 Windows | |
run: | | |
conda install curl eigen | |
conda install -c conda-forge hdf5 | |
conda remove -y yaml-cpp | |
echo "HOME_PATH=$GITHUB_WORKSPACE/.." >> $GITHUB_ENV | |
echo "CONDA_LOC=C:/Miniconda/Library" >> $GITHUB_ENV | |
$hdf5_libdir="C:/Miniconda/Library" | |
if: matrix.os == 'windows-latest' | |
- name: Install hdf5 MacOS | |
run: | | |
brew install hdf5 eigen | |
echo "HOME=$GITHUB_WORKSPACE/.." >> $GITHUB_ENV | |
hdf5_libdir=$HDF5_PATH | |
if: matrix.os == 'macos-latest' | |
- name: Install MOAB | |
run: | | |
cd $GITHUB_WORKSPACE | |
python -m pip install "cython<3" numpy | |
# clone and version | |
git clone --depth 1 https://bitbucket.org/fathomteam/moab -b 5.3.0 moab-repo | |
cd moab-repo | |
mkdir -p build | |
cd build | |
# cmake, build and install | |
cmake ../ -DENABLE_HDF5=ON \ | |
-DHDF5_ROOT=$hdf5_libdir \ | |
-DBUILD_SHARED_LIBS=ON \ | |
-DENABLE_PYMOAB=ON \ | |
-DENABLE_BLASLAPACK=OFF \ | |
-DENABLE_FORTRAN=OFF \ | |
-DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE | |
make | |
make install | |
cd $GITHUB_WORKSPACE | |
# Remove the temporary directory | |
rm -rf $GITHUB_WORKSPACE/moab-repo | |
echo "MOAB installed" | |
- name: Install DAGMC | |
run: | | |
cd $GITHUB_WORKSPACE | |
# make a new temporary directory | |
# clone the repository | |
git clone https://github.com/ahnaf-tahmid-chowdhury/DAGMC.git dagmc-repo | |
cd dagmc-repo | |
mkdir -p build | |
cd build | |
# cmake, build and install | |
cmake ../ -DMOAB_CMAKE_CONFIG=$GITHUB_WORKSPACE/lib/cmake/MOAB \ | |
-DMOAB_DIR=$GITHUB_WORKSPACE \ | |
-DBUILD_STATIC_LIBS=OFF \ | |
-DBUILD_TALLY=ON \ | |
-DCMAKE_INSTALL_PREFIX=$GITHUB_WORKSPACE | |
make | |
make install | |
cd $GITHUB_WORKSPACE | |
# Remove the temporary directory | |
rm -rf "$GITHUB_WORKSPACE/dagmc-repo" | |
echo "DAGMC installed" | |
- name: Checkout code | |
uses: actions/checkout@v3 | |
- name: Build wheels | |
run: | | |
export MOAB_ROOT=$GITHUB_WORKSPACE | |
export DAGMC_ROOT=$GITHUB_WORKSPACE | |
python setup.py bdist_wheel | |
- name: Install PyNE | |
run: | | |
python -m pip install dist/pyne*.whl | |
- name: Install pytest | |
run: | | |
python -m pip install pytest | |
- name: Test PyNE | |
run: python -m pytest -ra tests |